AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02162 ATGGCGCCGGCAGCCGGCGTTTCTTCAGTGGCCGAACGAGTGCCGGTGATGATGCCGGCGGTGATGCCGGAGGCAATTGCTAAGGATGCGATAATATCGTGGTTCCGAGGCGAGTTTGCTGCGGCGAACGCGATCATTGATGCGTTATGTGGCCATTTGTCGCAGTTTGAAGGCGGAAGAAGCGAGTATGAATCGGTGTTCGCGGCTATACATCGTCGCCGGTTGAATTGGATCCCGATTTTGCAGATGCAGCAGTATTTTTCGATCGCTGATGTGACTCTGGAGCTACAGAAAGTGGCGGAGAAGGTGAAGGTAACCGGCGGTGAGAAGATCCTAGAGGGTAATGTTTTTTCGCCGGTGAATGAGCCGATACGTGAAATTTTAGTCGATGAATCCGTTGAAATTAACGGAAATGACGGTGGTGATGATTCTGTCAAAGATTACAATTCGCCAAAGAGCGGGATCACAGATGCAGGATTGCAAGAAGTGCATTCAGTGGCTGTAAGCATTGAGATATGCTCAAATGAAGAAGACTGGGAGGCGCGACGAGCAGAAATTAAGATGACAAAAGGGTTTGCAGCCAAGGAGTCTGTAAAAGGGCATATGGTGAATGTTGTGAGAGGTTTGAAGTTGTATGAAGATATACTTAACAGGCACGAGTTATCTAAGTTGACCGAATATGTAAATGAACTCCGAGTTGCTGGCCAAAATGGTGAACTCTCAGGTGAAACTTTTATCAAGTACAACCAGCAGTCAAAGGCAATCAAAAGAGAGCTTATTCAGTTTGGAGCTCCAATTTTTGGACAGATAAAAGATGAAGCTACAAATAATAAATCCCAAGATAGCAACATAGAGCCGATTCCTGCTCCCCTTGAAGGTGTCATTGACCATCTTATTCAACTTCACTTAATTTCTGAAAACAGACGACCAAACAGTTGCATTATAAACTTTTTCGACGAGGGAGAATTTTCACAGCCTTTCTTGAAACCACCTCATTTAGAGCAACCCATGTCTACAATTGTTCTATCTGAGTCAACCATGGCTTTTGGCCGTACTCTAGTATGTGATAATGATGGAAACTACAAAGGACCACTCATGCTTTCTCTCAAGGAAGGGTCACTCTTAGTGATGAGAGGAAACAGTGCTGACATGGCCCGCCACGTTATGTGTCAGTCTTCAACCAAACGAATTAGTGTTTCGTTTTTCAAAGTACGTATAGATCCCTACGACAACAATCCACCTCCACAAGATCCTATGAGCGGAGCGATGACTGTATGGCAACCTAGTCTTACAACACCAGTAATCACACCAACCGGACAAATGGACGGCTACGACTCGATCCATGTTCTCCCCAAATGGGGTGCAATCCGCGCCCCACATCTGCTCATGTTAGCACCAGTCCGTCCAATGGTTATGAGCCCAAGAAGGCTGCCACGTGGGGGGACTGGTGTTTTCTTACCATGGAATAACGGATCCAAAAAACCCGCAAAGCATCTCCCACCTCGTGCACAAAGAGGGCGACTTCTCGCGCTGCATGCCTCCACCGAAGCACATAAAATGGACCGAAACCCCCATGAATCAGGCATTAGTGTTGCTTGA 1599 46.65 MAPAAGVSSVAERVPVMMPAVMPEAIAKDAIISWFRGEFAAANAIIDALCGHLSQFEGGRSEYESVFAAIHRRRLNWIPILQMQQYFSIADVTLELQKVAEKVKVTGGEKILEGNVFSPVNEPIREILVDESVEINGNDGGDDSVKDYNSPKSGITDAGLQEVHSVAVSIEICSNEEDWEARRAEIKMTKGFAAKESVKGHMVNVVRGLKLYEDILNRHELSKLTEYVNELRVAGQNGELSGETFIKYNQQSKAIKRELIQFGAPIFGQIKDEATNNKSQDSNIEPIPAPLEGVIDHLIQLHLISENRRPNSCIINFFDEGEFSQPFLKPPHLEQPMSTIVLSESTMAFGRTLVCDNDGNYKGPLMLSLKEGSLLVMRGNSADMARHVMCQSSTKRISVSFFKVRIDPYDNNPPPQDPMSGAMTVWQPSLTTPVITPTGQMDGYDSIHVLPKWGAIRAPHLLMLAPVRPMVMSPRRLPRGGTGVFLPWNNGSKKPAKHLPPRAQRGRLLALHASTEAHKMDRNPHESGISVA 532
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02162 532 Gene3D - 192 408 IPR037151 -
Mimi16g02162 532 SUPERFAMILY Clavaminate synthase-like 202 401 - -
Mimi16g02162 532 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 26 517 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02162 K10767 mRNA N6-methyladenine demethylase [EC:1.14.11.53]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:84516294 Mimi17g02317 Mimi-Chr17:81663496 dispersed