AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02171 ATGGAGTCACCTCACGGCCCAATGCGTTCGATCAAGCTATGGCCACCGAGCCACACCACACGTCTCCTGCTCGTTGATCGTATCGTTAAAAACTTCACAACCCCATCAATCTTGTCAAGAAAGTACGGTCTTCTAAGCAAAGAAGAAGCCGAAGAAGAAGCTAAACACATCGAATCTGCAGGTTTTATCGCAGCAGCCCAGCAATTTGAAAAAGATCATGAGACTGATGGTGCATCAGCTGTTCAAGTTTATGCTAAAGAATCAAGTAAACTAATGGTGGAATTCATCAAAACCGGGCCTAGACCAAAAGAATCCCAGGAAACCATACCGGGTTTGGTCGCATCAGATCATGTTTTCGATATATCTGGAGGTCGTCGAGCCTTTATCGATGCCGAAGAAGCCAAAGAACTGTTGAAACCGTTAAACGAGCCCGGAAACAAGTTTACAAAGATATGTTTTAGTAACCGGAGTTTCGGGCTAGCTGCAGCCCATGTGGCTGCATCGGTTTTGTCGGGGTTGAAAGATCGGTTAACCGAAGTTGATTTGTCGGACATTGTTACGAGGAGGCCCGAGCCCGAAGCTGTTGAGGTTATGAGGATGTTTTCATCGGCTCTTGAAGGTTGTAAGTTGAGTTATTTGAACTTGTCGAATAATGTGTTGGGTGAAAAGGGGGTTAGAGCATTTGGGGATCTTTTGAGGTCTCAAAGTGATCTTTTGGAGGTGTATTTGATGAGTGCTGGGATCACACCCGAAGCCGCGAAGGCGGTTTGCGAGTTGGTTCCGTCGACTGGTAAGCTTAAGGTTCTTCATTTTCATCACAGTAAGATGGGTGATGAAGGTGCCATCGCCATTTCTCAACTCGTGAAAGGGTCTCCGAACCTAGAGGATTTCAGGTGCTCCTCCGCACGGGTCGGATCCGTAGGTGGGATTGCGTTAGCCGAAGCACTTAAAACTTGTACCCTTTTAAAGAAACTCGACTTACGTGACAACATGTTTGGGCCAAAAGCCGGGGTTGCATTGAGTAATAGCCTTTCTATGCACGCTAATCTCACCGAAATCTACCTAAGTTACATGAATTTGGGAAACGAAGGCGCTATCGCGATTGCAAACGTGCTAAAAACCATCAAATCAACCCTCGAGATCATCGAGATGGCCGGAAACAACATCACTTTTGAAGCAGCAAAAGCCTTAGCTGATTGCATGGTTTCAAAGAAACATTCTCTAACCAAAATAAACTTATCCGAAAATGAACTGAAGGACCAAGGTGCCATCACAATCGGAAAGGCACTTGAAGATGATTTTCAATGGTTGTGCATCGTTGATTTGAGCGCGAATGGGATCGAAACAGATGGGGGTATGTCATTGGCTAAAGCAGTTGCGGATAAACCAGTGTTTCGACTGCTAAATATCAATGGAAACTTGTTATCTTATAAAGGGATTGAAGGGGTAAGAGAGATTTTTAAAAATTTCCCTCGTAAGATTGGACCGCTTGACGATAATGATCCGCACGACAAAGACGACGACGACAAGTCCGATGAACCTGAATCGAAGCTCAAAGACCTTGAAACGAGTCGAAAAGAATAA 1584 44.95 MESPHGPMRSIKLWPPSHTTRLLLVDRIVKNFTTPSILSRKYGLLSKEEAEEEAKHIESAGFIAAAQQFEKDHETDGASAVQVYAKESSKLMVEFIKTGPRPKESQETIPGLVASDHVFDISGGRRAFIDAEEAKELLKPLNEPGNKFTKICFSNRSFGLAAAHVAASVLSGLKDRLTEVDLSDIVTRRPEPEAVEVMRMFSSALEGCKLSYLNLSNNVLGEKGVRAFGDLLRSQSDLLEVYLMSAGITPEAAKAVCELVPSTGKLKVLHFHHSKMGDEGAIAISQLVKGSPNLEDFRCSSARVGSVGGIALAEALKTCTLLKKLDLRDNMFGPKAGVALSNSLSMHANLTEIYLSYMNLGNEGAIAIANVLKTIKSTLEIIEMAGNNITFEAAKALADCMVSKKHSLTKINLSENELKDQGAITIGKALEDDFQWLCIVDLSANGIETDGGMSLAKAVADKPVFRLLNINGNLLSYKGIEGVREIFKNFPRKIGPLDDNDPHDKDDDDKSDEPESKLKDLETSRKE 527
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02171 527 Pfam WPP domain 10 104 IPR025265 -
Mimi16g02171 527 MobiDBLite consensus disorder prediction 492 527 - -
Mimi16g02171 527 SMART LRR-RI-2 376 403 - -
Mimi16g02171 527 SMART LRR-RI-2 434 461 - -
Mimi16g02171 527 SMART LRR-RI-2 405 432 - -
Mimi16g02171 527 SMART LRR-RI-2 347 374 - -
Mimi16g02171 527 SMART LRR-RI-2 319 346 - -
Mimi16g02171 527 SMART LRR-RI-2 263 290 - -
Mimi16g02171 527 SMART LRR-RI-2 235 262 - -
Mimi16g02171 527 SMART LRR-RI-2 291 318 - -
Mimi16g02171 527 SMART LRR-RI-2 207 234 - -
Mimi16g02171 527 Gene3D WPP domain 10 108 IPR038214 -
Mimi16g02171 527 Gene3D Ribonuclease Inhibitor 117 511 IPR032675 -
Mimi16g02171 527 SUPERFAMILY RNI-like 128 513 - -
Mimi16g02171 527 Pfam Leucine Rich repeat 319 341 IPR001611 GO:0005515(InterPro)
Mimi16g02171 527 Pfam Leucine Rich repeat 208 228 IPR001611 GO:0005515(InterPro)
Mimi16g02171 527 Pfam Leucine Rich repeat 405 426 IPR001611 GO:0005515(InterPro)
Mimi16g02171 527 Pfam Leucine Rich repeat 265 285 IPR001611 GO:0005515(InterPro)
Mimi16g02171 527 Pfam Leucine Rich repeat 349 369 IPR001611 GO:0005515(InterPro)
Mimi16g02171 527 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 4 523 IPR045203 GO:0005096(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02171 K14319 Ran GTPase-activating protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
129622 Mimi16g02171 Mimi17g02304
421294 Mimi16g00521 Mimi16g02171
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:16457950 Mimi16g02171 Mimi-Chr16:84762048 wgd
Mimi Mimi-Chr16:84762048 Mimi17g02304 Mimi-Chr17:81370475 wgd