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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02184 ATGCCGACCAACTTTGAACGGAATCTCAACCTCTGCTTCAACAAAATCAAACGCCACCAATCCCCACCACCACCACCATCCCACCACCACCGCCGCCATCACCGTCGTTGCCACTCTGAAACCACTGTCAAAACCTTCAACACCCTCTACGACATCCCTGCAGCCTCAGATTCCGAAGACGGGTCACCCACCACCGCCGCCGCCGCCGACTTCTCCACCGTAATCGCCTCCGACCGATTCTTTTTCTCCTCCCCCGGCAGATCCAATTCCATCATTGAATCTTCATCCCACTCAACATCCTCCATCGCTTCAACCTCCTTCTCGCCGGAAGATCCCGCCGGAGACTTGTTTGAAACTGCTGGCGGTGGCGTTGCAATCCCGACAATCTCGCCGGACCCGTACTTTGATTTTAGAAAATCGATGCAGGAGATGGTGGAAGCACGTGACCTCGTCGATGTTCGCGCCAATTGGGATTATTTACACGAGCTGCTCACGTGCTATCTGGATTTAAATCCGAAGAGTGCTCACAAGTTCATCGTCGGAGCTTTTGCTGATCTTCTTGTTACTCTCATGACGGCATCAACGGCGGAGGCCGGTGGTCGCCGGAATATTTAA 615 53.66 MPTNFERNLNLCFNKIKRHQSPPPPPSHHHRRHHRRCHSETTVKTFNTLYDIPAASDSEDGSPTTAAAADFSTVIASDRFFFSSPGRSNSIIESSSHSTSSIASTSFSPEDPAGDLFETAGGGVAIPTISPDPYFDFRKSMQEMVEARDLVDVRANWDYLHELLTCYLDLNPKSAHKFIVGAFADLLVTLMTASTAEAGGRRNI 204
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02184 204 MobiDBLite consensus disorder prediction 16 39 - -
Mimi16g02184 204 ProSiteProfiles OVATE domain profile. 126 189 IPR006458 -
Mimi16g02184 204 Pfam Transcriptional repressor, ovate 130 190 IPR006458 -
Mimi16g02184 204 NCBIfam uncharacterized plant-specific domain TIGR01568 127 191 IPR006458 -
Mimi16g02184 204 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 31 193 IPR038933 GO:0045892(InterPro)
Mimi16g02184 204 MobiDBLite consensus disorder prediction 22 39 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02184 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:84973688 Mimi1g01334 Mimi-Chr1:78928400 dispersed
Mimi Mimi-Chr16:84973688 Mimi1g03057 Mimi-Chr1:110644918 transposed
Mimi Mimi-Chr16:84973688 Mimi1g03021 Mimi-Chr1:110150812 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi Ovate 3.4e-24 No_clan TF OFP