AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02190 ATGGCAATCAGAAGCATCTCCGGAGACACATTGATGTCAGATTTCCTTCATAAGTGCGGCGGCGTTGCGCTTATCGACGGCGGACTTGCGACGGAGCTCGAACGATACGGTGCCGACCTTAACGATCCACTCTGGAGCGCCAAATGCCTCGTGACTTCTACTCACCTTATTCGTCAGGTACACCTAGATTATCTTGAAGCTGGTGCAGATATAATAATTACAGCATCTTACCAGCAGGCTACAATTCAAGGGTTTGAGGCTAAAGGCTATTCTTCAGAGGACGGTGAGTCCATGCTTAGAAAAAGCGTAGAAATTGCATGTGAAGCAAGGGATTTATATTATCAAATATGCCGTGATGCTGTAATTGATTATACTGATGATGGAAGAATTTTCAAACATCGTCCCATTTTAGTTGCTGCTTCTGTAGGAAGTTATGGGGCTTATCTGGCTGATGGTTCTGAATACAGTGGGGACTATGGTGATGCAATGGATTTGGAATTCTTGAAAGGTTTTCACCGAAGAAGAGTTCAAGTTTTAGCTGAATCTGGTGCTGATCTGATATCATTTGAAACAATACCAAATAAGCTAGAAGCACAGGCTTTTTCTGAGCTTCTTGAAGAAGGCATAAATATTCCCGCATGGTTTGCATTTAATTCCAAAGATGGCGTAAATGTAGTCGGTGGTGATTCCTTAGCTGAATGTGCCAGAATTGCTGATTCATGTAAGAAAGTTGTTGCTGTTGGAATCAACTGCACCCCTCCTAGATTCATTGGTGGTTTAATTTCAAAAATAAAAAAGGTGACAAATAAACCGATACTTGTGTATCCTAATAGCGGTGAAAGATATGATGCTCAACTAAAACAGTGGATGCAAAACACTGGAGTAGCAGAAGAGGATTTTGTTTCATATGTGAACAGATGGTGTGAGATGGGTGCATCGCTTGTTGGAGGCTGCTGCAGAACCACCCCTGACACAATTAGAGCCATTTATAGAACTCTTCCCAGCAGATCCGTTCCTACACCCGTTGTTGAAAATGTTCAAATCCTGATAACGCCATATATGGATACTGAAGCTAATGGGGAAAACGCCTCTTTGGTTTTGATAAAGCAAGGCGCTGAAGCTAGAGTTTTTGAGTCAACATTTGCTGGAAGGAAGTCTATTGTTAAGGAGCGGTTCTCAAAGAAGTATAGACATCCGACTTTAGATTCAAAGCTCACCCTCAAGCGATTAAATGCGGAAGCTAGGTGTATGACAAAGGCTAGACGACTTGGAGTTTCTACTCCTGTGCTTTATGCGGTAGACCCTATATCACATACTCTAACTTTTGAGTATGTTGAAGGCCCTTCTATCAAAGATATATTTCTTGAATTTGGAATTCAAGGAGTTGTTGAAGAAAAGATGGATGATATTGCCTTACAAATTGGGGATACAATTGGAAAATTACATGATGGTGGGGTCATTCATGGGGATTTGACCACTTCAAATATGTTATGGCGTAGTGGCAGCAACCAGCTGGTGTTAATTGATTTTGGTTTGAGCTTTGTGTCAACCCTTCCAGAGGATAAAGCTGTTGATTTATATGTACTTGAACGAGCCTTGCTGTCGATGCATTCTTCTTGTGGAAATGTGATGGATAAGATACTTGCAGCATATAGGAAGTCTTCAAAGCAATGGTCATCCACATTTAACAAACTTGGTCAAGTGAGACTACGAGGTAGAAAACGAAGCATGATTGGATGA 1740 41.44 MAIRSISGDTLMSDFLHKCGGVALIDGGLATELERYGADLNDPLWSAKCLVTSTHLIRQVHLDYLEAGADIIITASYQQATIQGFEAKGYSSEDGESMLRKSVEIACEARDLYYQICRDAVIDYTDDGRIFKHRPILVAASVGSYGAYLADGSEYSGDYGDAMDLEFLKGFHRRRVQVLAESGADLISFETIPNKLEAQAFSELLEEGINIPAWFAFNSKDGVNVVGGDSLAECARIADSCKKVVAVGINCTPPRFIGGLISKIKKVTNKPILVYPNSGERYDAQLKQWMQNTGVAEEDFVSYVNRWCEMGASLVGGCCRTTPDTIRAIYRTLPSRSVPTPVVENVQILITPYMDTEANGENASLVLIKQGAEARVFESTFAGRKSIVKERFSKKYRHPTLDSKLTLKRLNAEARCMTKARRLGVSTPVLYAVDPISHTLTFEYVEGPSIKDIFLEFGIQGVVEEKMDDIALQIGDTIGKLHDGGVIHGDLTTSNMLWRSGSNQLVLIDFGLSFVSTLPEDKAVDLYVLERALLSMHSSCGNVMDKILAAYRKSSKQWSSTFNKLGQVRLRGRKRSMIG 579
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02190 579 Gene3D - 13 331 IPR036589 -
Mimi16g02190 579 Pfam Protein kinase domain 394 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mimi16g02190 579 NCBIfam KEOPS complex kinase-ATPase Bud32 371 573 IPR022495 GO:0004674(InterPro)
Mimi16g02190 579 FunFam TP53-regulating kinase isoform X1 373 445 - -
Mimi16g02190 579 Pfam Homocysteine S-methyltransferase 24 332 IPR003726 -
Mimi16g02190 579 ProSiteProfiles Homocysteine-binding domain profile. 11 333 IPR003726 -
Mimi16g02190 579 Gene3D Transferase(Phosphotransferase) domain 1 458 576 - -
Mimi16g02190 579 FunFam Protein kinase superfamily protein 460 576 - -
Mimi16g02190 579 ProSiteProfiles Protein kinase domain profile. 362 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mimi16g02190 579 PANTHER ZGC:172121 15 334 IPR051486 GO:0008898(PANTHER)|GO:0009086(PANTHER)|GO:0033528(PANTHER)
Mimi16g02190 579 FunFam Homocysteine S-methyltransferase 12 332 - -
Mimi16g02190 579 SMART serkin-6 362 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mimi16g02190 579 SUPERFAMILY Protein kinase-like (PK-like) 367 527 IPR011009 -
Mimi16g02190 579 SUPERFAMILY Homocysteine S-methyltransferase 20 343 IPR036589 -
Mimi16g02190 579 Gene3D Phosphorylase Kinase; domain 1 373 445 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02190 K00547 homocysteine S-methyltransferase [EC:2.1.1.10]
Mimi16g02190 K08851 TP53 regulating kinase and related kinases [EC:2.7.11.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
129633 Mimi16g02190 Mimi5g01495
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr10:57400135 Mimi16g02190 Mimi-Chr16:85104091 dispersed
Mimi Mimi-Chr16:85104091 Mimi5g01405 Mimi-Chr5:70676465 wgd
Mimi Mimi-Chr16:85104091 Mimi5g01495 Mimi-Chr5:72487848 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi S-methyl_trans 8.3e-74 No_clan PK TKL-Pl-4