AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02194 ATGGAGAACTATGAAATATTAGAGCAGATTGGTAAAGGATCCTTTGCTTCTGCTCTCCTTGTGAGGCATAAACATGAAAAAAAAAGGTATGTTTTGAAAAAGATTCGGCTTGCTCGCCAGTCTGACAGGACCCGTCGATCTGCTCTCTTGGAGATGGAACTTATTTCCACTGTGCAAAATCCTTTTATAGTAGAGTACAAAGATTCATGGGTTGAGAAGGGTTGCTATGTATGCATTGTTATAGCATACTGTGAAGGAGGAGATATGGCGGAAGCAATAAAAAAAGCCAACGGTGTTCATTTTCCAGAAGAGAAACTCTGCAAATGGCTTGTCGAACTACTGATGGCACTTGATTATCTGCATGTTAATCATATTATTCATCGTGATGTCAAGTGTTCAAATATATTTCTAACAAGAGATCAAGATATCCGACTTGGTGATTTTGGTCTTGCAAAAATGTTGACTTCTGATGATCTTGCATCCTCGGTTGTGGGGACTCCTAGTTATATGTGCCCTGAACTTCTTGCAGACATACCTTATGGTTCAAAATCAGACATATGGTCATTAGGATGCTGCATGTATGAAATGGCGGCCTTCAAGTCTGCATTTAAAGCTTTTGACATGCAATCTCTGATCAACAAGATTAATAAATCCATAGTGTCTCCACTCCCGACCATGTATTCTGGCGCATTCCGTGGGATTATTAAGAGTATGCTGCGGAAAAACCCAGAAATGAGACCAAGCGCTGCTGATTTGCTCAAACATTTGCATCTTCAACCGTATGTGCTTAAACTTCATCTTAACATCAATGGGCCTAGACGTCATTCTATTCCATCCCATTGGTCGGATTACAACTATGAAAAAACCACCACCTTCATTGAGCCCGAACCTCATCTTCACAACAGAAATAGGTCATCTTTTGGCAGTGACAGGGCTTTAAATCCTAGCATATCTGAACATGATCAGTATTCTTCATATTCCCAAAATTCAACTAGAAAGCTATCCATTGGCAGTGTTGAAGAATACATACAAACAGAGAAATTAGTTGCTGCAAGAACTCCAAGAGTCACTTCTGTAAAACCTTCTGTTACTGTTTTTACTCCCAGAAGGCAAATTGCTTCATCAAAGCTTCTGATATCACAAACTCCGGCCAGCATATCATCACGAACAACTCGTCGGACATCATTACCCTTATCAACCAGGGTCACAAAACCACACTTGGGTTTTGAATCTCCAGACGTATCAGTCAACGCACCGCGGATCGACAAAATGACCGAATTACCCGTAACGTACCCACAACAACCTGTGATCCGACCAACCCGTAAAACATCTTCAACATCTGCTCAATGTTCTTCTGCTACTTCTTCAAACACCATCCTGGACCGGTCTGTTACAATAGACATGTGCACAGTCAAGACCGTTAACCCGAGTCAGAGCCACCAAACAGGTGCGGGTGCTCCCTCCATAACCAACAAGAGTGATGACACATCAGATTCAAGAGGACCAAGGAGGAGGTTTGACACATCATCATACCAACAACGAGCTGAAGCGTTAGAAGGATTGTTGGAGTTCAGTGCACTACTTATGCAACAAGAACGGATAGAAGAACTAGCAGTTTTGTTGAAGCCATTTGGACCTGAAAAGGTGTCTCCTAGAGAAACTGCAATTTGGTTGTCAAAGAGCTTAAAGAGAACCGGAACCGAAACCGGAACCGGGACCGGGACTGGAGTTAGTGCTATGGGAAATTTGTAA 1752 42.24 MENYEILEQIGKGSFASALLVRHKHEKKRYVLKKIRLARQSDRTRRSALLEMELISTVQNPFIVEYKDSWVEKGCYVCIVIAYCEGGDMAEAIKKANGVHFPEEKLCKWLVELLMALDYLHVNHIIHRDVKCSNIFLTRDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCMYEMAAFKSAFKAFDMQSLINKINKSIVSPLPTMYSGAFRGIIKSMLRKNPEMRPSAADLLKHLHLQPYVLKLHLNINGPRRHSIPSHWSDYNYEKTTTFIEPEPHLHNRNRSSFGSDRALNPSISEHDQYSSYSQNSTRKLSIGSVEEYIQTEKLVAARTPRVTSVKPSVTVFTPRRQIASSKLLISQTPASISSRTTRRTSLPLSTRVTKPHLGFESPDVSVNAPRIDKMTELPVTYPQQPVIRPTRKTSSTSAQCSSATSSNTILDRSVTIDMCTVKTVNPSQSHQTGAGAPSITNKSDDTSDSRGPRRRFDTSSYQQRAEALEGLLEFSALLMQQERIEELAVLLKPFGPEKVSPRETAIWLSKSLKRTGTETGTGTGTGVSAMGNL 583
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02194 583 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mimi16g02194 583 MobiDBLite consensus disorder prediction 496 510 - -
Mimi16g02194 583 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mimi16g02194 583 SMART serkin-6 4 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mimi16g02194 583 SUPERFAMILY Protein kinase-like (PK-like) 1 327 IPR011009 -
Mimi16g02194 583 ProSitePatterns Serine-Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mimi16g02194 583 MobiDBLite consensus disorder prediction 295 330 - -
Mimi16g02194 583 FunFam Serine-threonine-protein kinase Nek2 84 274 - -
Mimi16g02194 583 MobiDBLite consensus disorder prediction 306 330 - -
Mimi16g02194 583 MobiDBLite consensus disorder prediction 436 456 - -
Mimi16g02194 583 MobiDBLite consensus disorder prediction 475 512 - -
Mimi16g02194 583 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Mimi16g02194 583 MobiDBLite consensus disorder prediction 434 456 - -
Mimi16g02194 583 PANTHER SERINE-THREONINE-PROTEIN KINASE NEK 4 533 IPR050660 GO:0004674(PANTHER)
Mimi16g02194 583 FunFam Probable serine-threonine-protein kinase nek1 1 83 - -
Mimi16g02194 583 Gene3D Transferase(Phosphotransferase) domain 1 84 268 - -
Mimi16g02194 583 CDD STKc-Nek 3 255 - -
Mimi16g02194 583 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Mimi16g02194 583 MobiDBLite consensus disorder prediction 475 495 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02194 K08857 serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
129634 Mimi16g02194 Mimi17g02287
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:5622345 Mimi16g02194 Mimi-Chr16:85228423 dispersed
Mimi Mimi-Chr16:85228423 Mimi1g01590 Mimi-Chr1:84591893 dispersed
Mimi Mimi-Chr10:47746059 Mimi16g02194 Mimi-Chr16:85228423 transposed
Mimi Mimi-Chr16:85228423 Mimi17g02287 Mimi-Chr17:81149386 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi19g01344 WGDA 1 346 MAP Kinase Kinase gene family AT1G51660 70.286 5.74e-174 486.0
Mimi16g00223 . 47 350 MAP Kinase Kinase gene family AT4G29810 29.642 1.44e-39 146.0
Mimi16g02194 ACH 67 333 MAP Kinase Kinase gene family AT4G29810 30.996 4.74e-35 134.0
Mimi16g02511 . 47 350 MAP Kinase Kinase gene family AT4G29810 29.967 2.33e-40 149.0
Mimi13g02004 . 1 354 MAP Kinase Kinase gene family AT4G29810 68.644 0.0 527.0
Mimi12g00978 . 1 347 MAP Kinase Kinase gene family AT1G51660 64.225 1.92e-151 429.0
Mimi11g00885 . 41 271 MAP Kinase Kinase gene family AT4G29810 30.769 1.99e-32 128.0
Mimi8g00467 . 1 308 MAP Kinase Kinase gene family AT1G73500 65.064 1.28e-139 395.0
Mimi8g00494 ACH 1 308 MAP Kinase Kinase gene family AT1G73500 65.064 1.28e-139 395.0
Mimi5g00329 . 22 52 MAP Kinase Kinase gene family AT5G56580 67.742 2.60e-06 45.8
Mimi5g00348 . 27 52 MAP Kinase Kinase gene family AT5G56580 76.923 5.16e-06 44.3
Mimi3g00386 WGDA 66 348 MAP Kinase Kinase gene family AT3G21220 77.32 7.35e-166 464.0
Mimi3g00459 . 66 348 MAP Kinase Kinase gene family AT3G21220 77.32 7.35e-166 464.0
Mimi3g00776 . 8 344 MAP Kinase Kinase gene family AT5G56580 82.789 0.0 590.0
Mimi3g00802 . 8 348 MAP Kinase Kinase gene family AT5G56580 82.111 0.0 593.0
Mimi1g02691 . 1 516 MAP Kinase Kinase gene family AT5G40440 79.264 0.0 865.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi Pkinase 5.1e-61 CL0016 PK NEK