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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02201 ATGAACCCATTTTACTCAGTTGTTAAGGAAGAGTACCCATCAACCGCTGATGGTGGTGGCAGCAGCAGCGGTGGTGATGATGGTTCAAGGTTAGATCAGCTGATGATGGGACAAGCTCCACAGCCAATGGAGGGTCTTCATGATTCTGGGCCACCACCATTTTTGACAAAGATTTATGATATGGTGAATGATCAAACTATTGATCATATTATTTGTTGGAGCAGAGGAGGTCAAAGCTTTGTTGTGCTGGATCCACATGCTTTTTCTACTAATCTCCTTCCAAGATACTTTAAGCACAATAATTTCTCTAGCTTTGTGAGACAGCTTAATACTTATGGATTCAGAAAGATTGATACCGAAACATGGGAATTCGCGAACGAAGCATTCGTGAGAGGCCAACGGCATGTTTTGAAGAACATCAAAAGGAGAAGAACACCTAATACTCAAGCTACATCTCCACAACAAATTCTAGCTCCTGTTGATGAAACTGGTAAATCAAATTTAGATGAAGTTAGTCATCTAAAACATGAAAAACAGGTTCTTATGATAGAACTAACGAAGCTAAAACAACAACAACAAAGCACGCGAGCCCAACTTCAAGCCATGGAGCTTAGATTACAAGGAACCGAGAAAAAACAACAAAAGATGATGCAATTCTTGGCAAAAGCTATGCAAAGTCCTGATTTTGTGCAGAAATTGGTCCAACATGGTAAAAAGAAAGAATTTCAAGAAGCAATCAAGAATCAGATTGGTGAATCGAGTCAAACATGTCGCGGGTCTAAGCTTATTAAAGCCGAACCAGATGAATTCATGGATCGTTCGCCATTTCAATTATCTGAACTTGAGGCACTTGCTTTAGAAATTCAAGGGTTTGGTAGATTGAAAAGAAATCAAGAACAAGAGCAAGAAAGTGAGGATCTTGAACTTGATGGTGGGGAGAAAGAACTTGATGATGAATTCTGGGAAGAGTTGTTTAGTGAGAGATCTTATGAACAGCCTGCTGCTGATGATGTGAGTTTCTTGGCTGATAAGTTGGATTTCTTGGGCTCGAGCCCAAAGTAG 1062 40.11 MNPFYSVVKEEYPSTADGGGSSSGGDDGSRLDQLMMGQAPQPMEGLHDSGPPPFLTKIYDMVNDQTIDHIICWSRGGQSFVVLDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDTETWEFANEAFVRGQRHVLKNIKRRRTPNTQATSPQQILAPVDETGKSNLDEVSHLKHEKQVLMIELTKLKQQQQSTRAQLQAMELRLQGTEKKQQKMMQFLAKAMQSPDFVQKLVQHGKKKEFQEAIKNQIGESSQTCRGSKLIKAEPDEFMDRSPFQLSELEALALEIQGFGRLKRNQEQEQESEDLELDGGEKELDDEFWEELFSERSYEQPAADDVSFLADKLDFLGSSPK 353
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02201 353 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi16g02201 353 PRINTS Heat shock factor (HSF) domain signature 54 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi16g02201 353 PRINTS Heat shock factor (HSF) domain signature 105 117 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi16g02201 353 MobiDBLite consensus disorder prediction 295 314 - -
Mimi16g02201 353 FunFam Heat shock transcription factor 1 47 144 - -
Mimi16g02201 353 SMART hsfneu3 50 143 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi16g02201 353 Coils Coil 171 212 - -
Mimi16g02201 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 329 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Mimi16g02201 353 SUPERFAMILY Winged helix DNA-binding domain 49 143 IPR036390 -
Mimi16g02201 353 Pfam HSF-type DNA-binding 54 143 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi16g02201 353 MobiDBLite consensus disorder prediction 11 33 - -
Mimi16g02201 353 ProSitePatterns HSF-type DNA-binding domain signature. 93 117 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi16g02201 353 Gene3D - 46 144 IPR036388 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02201 K09419 heat shock transcription factor, other eukaryote
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:85411134 Mimi17g02324 Mimi-Chr17:81776799 dispersed
Mimi Mimi-Chr16:85411134 Mimi4g00884 Mimi-Chr4:16836529 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi18g00518 . 17 299 Heat shock transcription factors Hsfs gene family AT1G67970 41.914 5.77e-69 218.0
Mimi18g01605 . 5 264 Heat shock transcription factors Hsfs gene family AT5G62020 44.649 7.33e-59 189.0
Mimi17g02324 . 45 376 Heat shock transcription factors Hsfs gene family AT3G22830 50.0 1.70e-103 306.0
Mimi17g02984 . 18 167 Heat shock transcription factors Hsfs gene family AT3G24520 34.81 2.66e-26 102.0
Mimi16g00973 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 48.246 3.33e-128 377.0
Mimi16g01471 . 30 284 Heat shock transcription factors Hsfs gene family AT5G03720 51.351 2.34e-82 254.0
Mimi16g01512 . 9 284 Heat shock transcription factors Hsfs gene family AT5G03720 50.0 8.05e-86 263.0
Mimi16g02201 . 19 267 Heat shock transcription factors Hsfs gene family AT3G51910 52.265 5.13e-91 272.0
Mimi15g01001 . 7 268 Heat shock transcription factors Hsfs gene family AT4G36990 51.128 3.47e-71 218.0
Mimi15g01872 . 9 290 Heat shock transcription factors Hsfs gene family AT1G32330 48.442 1.15e-88 279.0
Mimi14g00728 . 31 334 Heat shock transcription factors Hsfs gene family AT2G26150 52.615 3.65e-103 309.0
Mimi14g00828 . 31 343 Heat shock transcription factors Hsfs gene family AT2G26150 52.853 2.39e-109 322.0
Mimi14g02441 . 14 179 Heat shock transcription factors Hsfs gene family AT3G24520 64.407 1.62e-76 230.0
Mimi11g00281 . 7 276 Heat shock transcription factors Hsfs gene family AT4G36990 50.903 1.49e-80 242.0
Mimi11g00779 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 52.139 7.39e-107 314.0
Mimi10g00795 . 1 401 Heat shock transcription factors Hsfs gene family AT4G18880 41.304 9.27e-87 266.0
Mimi10g01212 . 1 397 Heat shock transcription factors Hsfs gene family AT4G18880 42.0 5.83e-87 267.0
Mimi9g00055 . 51 118 Heat shock transcription factors Hsfs gene family AT4G11660 82.353 2.60e-37 130.0
Mimi9g00617 . 4 477 Heat shock transcription factors Hsfs gene family AT1G32330 41.406 1.90e-97 298.0
Mimi7g01441 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 49.107 7.50e-127 374.0
Mimi6g01052 . 12 267 Heat shock transcription factors Hsfs gene family AT5G62020 54.61 1.20e-91 273.0
Mimi6g01075 . 12 267 Heat shock transcription factors Hsfs gene family AT5G62020 54.61 1.12e-92 276.0
Mimi5g00505 . 3 343 Heat shock transcription factors Hsfs gene family AT1G46264 54.762 1.77e-117 342.0
Mimi5g01065 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 52.174 8.81e-62 195.0
Mimi4g00085 . 66 266 Heat shock transcription factors Hsfs gene family AT5G54070 38.462 1.03e-24 103.0
Mimi4g00116 . 66 216 Heat shock transcription factors Hsfs gene family AT5G54070 41.935 3.30e-25 104.0
Mimi4g00884 . 31 341 Heat shock transcription factors Hsfs gene family AT2G26150 55.763 8.09e-113 332.0
Mimi3g00765 . 14 195 Heat shock transcription factors Hsfs gene family AT3G24520 60.428 1.17e-74 229.0
Mimi3g00841 . 31 246 Heat shock transcription factors Hsfs gene family AT2G26150 46.875 6.20e-71 224.0
Mimi2g00359 . 8 400 Heat shock transcription factors Hsfs gene family AT4G18880 40.712 3.67e-87 267.0
Mimi2g01448 . 8 274 Heat shock transcription factors Hsfs gene family AT5G45710 48.789 3.14e-77 239.0
Mimi1g03573 . 15 268 Heat shock transcription factors Hsfs gene family AT5G62020 53.846 2.82e-87 263.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi HSF_DNA-bind 6.2e-33 CL0123 TF HSF