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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02202 ATGATGTTTTCAGCATCAGTTTATAATAATTCTTCTACAAGTAATAGAACCTCAACTTCTGTATCTGAAGAAGCTGCAGCAACCAGCACTGTGATTTCCCCATTAATTTCAAGTAAGATTCACCATGAATTCACTCCATCAATGGCACTTTCTTCAATTTCAAATCATAGTCGAGAACAACATCACCTCTACCCTAGCCCTCAAAAGATCAAGAAAAAGAGAAACCTTCCAGGAAACCCAGATCCAGATGCAGAAGTGATAGCATTATCACCAAAAACACTAATGGCAACAAACAGATTTGTGTGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAACCTGCAACTTCACAGAAGAGGTCATAACCTGCCATGGAAACTGAAGCAAAGAAACAATAAAGATGAAATCAAGAAAAGAGCCTATGTGTGCCCTGAACTTAGCTGTGTGCACCACCACCCTTCTAGGGCCCTTGGTGATCTCACTGGGATCAAGAAACACTTTTGCAGAAAACATGGCGAAAAGAAGTGGAAGTGTGACAAGTGTTCCAAGATCTATGCAGTTCAATCTGATTGGAAAGCACATTCTAAAACTTGTGGAACTAGGGAGTATAGATGTGACTGTGGTACCCTCTTCTCCAGGAAAGATAGCTTCATTACTCACAGAGCCTTCTGCGACGCTTTGGCTGAAGAAACTGCCAGACTCTCAGCTGCAGCTGCAGCTGCAGCGGCTGGAATTTCAATAACTGACAGAAACCACCCCTCAACTATCAACAACCTTACACAACCACCCTTCAACTTTCAACTAAGTTCACAAAACCCCCCATCGTCACTTTTTCCTTTCCACTCAAACCCTACTTGGATCCCTAATCCGACCCGAATCAAACCCGAAGCCACCAACCACCAAATTCCGGCGATATCTTTGCCGTTCTATCAAGACCAAGATAAGGGTATGATGGTACTTTCACAGCCGCCAGTGACATTCCCCGGATGCCACGTCAGCAACGGCAACCATCATCCAGTAACGCACCTTTCCGCCACCGCGCTGCTGCAGAAGGCGGCGACGGTGGGTGCGGTGGGGGATCACGTGGGATCGGCGATGAGTGGTTTGGATATGGGTGAGTTGGGTCACGTGACCCCCGCCGGTGTGCTCTCGCCGGAGTACCACCGACACTTGGGTCTGGCTTCCGGCAACGTGTACACGTGGCAGAAGACGGACCGTTTGACCAGAGATTTTCTTGGGTTGACTGGCGATCAAGCAGACGGCCACCGTGGCGGTGGGATGGAGGCTAACGTGCACTTGAGGGGTATGCTAACGTACGCGGGGGGTATAGAAATCCCAGCTGATGGATTCGGTGCAGGTGACTCGGAAGCGTGGGGCAACTGTTGA 1389 48.24 MMFSASVYNNSSTSNRTSTSVSEEAAATSTVISPLISSKIHHEFTPSMALSSISNHSREQHHLYPSPQKIKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDEIKKRAYVCPELSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEETARLSAAAAAAAAGISITDRNHPSTINNLTQPPFNFQLSSQNPPSSLFPFHSNPTWIPNPTRIKPEATNHQIPAISLPFYQDQDKGMMVLSQPPVTFPGCHVSNGNHHPVTHLSATALLQKAATVGAVGDHVGSAMSGLDMGELGHVTPAGVLSPEYHRHLGLASGNVYTWQKTDRLTRDFLGLTGDQADGHRGGGMEANVHLRGMLTYAGGIEIPADGFGAGDSEAWGNC 462
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02202 462 SMART c2h2final6 100 122 IPR013087 -
Mimi16g02202 462 SMART c2h2final6 177 197 IPR013087 -
Mimi16g02202 462 MobiDBLite consensus disorder prediction 1 26 - -
Mimi16g02202 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Mimi16g02202 462 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Mimi16g02202 462 Gene3D Classic Zinc Finger 170 235 - -
Mimi16g02202 462 Pfam Zinc finger, C2H2 type 100 122 IPR013087 -
Mimi16g02202 462 Gene3D Classic Zinc Finger 79 148 - -
Mimi16g02202 462 MobiDBLite consensus disorder prediction 51 80 - -
Mimi16g02202 462 FunFam protein indeterminate-domain 5, chloroplastic-like 155 234 - -
Mimi16g02202 462 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 203 240 - -
Mimi16g02202 462 PANTHER SERINE-THREONINE-PROTEIN KINASE RIO 56 419 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mimi16g02202 462 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 176 200 - -
Mimi16g02202 462 SUPERFAMILY beta-beta-alpha zinc fingers 99 197 IPR036236 -
Mimi16g02202 462 FunFam protein indeterminate-domain 12-like 79 148 - -
Mimi16g02202 462 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 138 172 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02202 K25870 zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:85429922 Mimi1g02930 Mimi-Chr1:108443711 dispersed
Mimi Mimi-Chr16:85429922 Mimi18g02378 Mimi-Chr18:94991033 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi19g00269 . 37 498 IDZ gene family AT1G03840 48.218 2.36e-131 387.0
Mimi18g02378 WGDA 18 336 IDZ gene family AT1G55110 56.798 1.02e-109 331.0
Mimi16g00554 . 34 344 IDZ gene family AT3G50700 55.59 1.95e-112 341.0
Mimi16g01168 ACH,WGDA 49 243 IDZ gene family AT5G03150 78.571 4.70e-108 327.0
Mimi16g02202 . 39 378 IDZ gene family AT4G02670 52.038 4.18e-128 375.0
Mimi14g00738 WGDA 17 339 IDZ gene family AT1G55110 57.227 6.70e-120 360.0
Mimi14g00818 ACH 17 339 IDZ gene family AT1G55110 57.227 1.43e-120 359.0
Mimi14g01758 . 21 344 IDZ gene family AT3G50700 53.846 3.52e-110 332.0
Mimi13g00738 ACH 17 339 IDZ gene family AT1G55110 52.924 4.94e-112 338.0
Mimi11g00913 . 20 446 IDZ gene family AT3G50700 50.0 3.01e-132 389.0
Mimi11g01484 WGDA 36 337 IDZ gene family AT1G55110 59.807 9.22e-116 347.0
Mimi10g01587 . 51 285 IDZ gene family AT4G02670 58.537 3.79e-95 289.0
Mimi8g01315 ACH 49 242 IDZ gene family AT5G03150 79.381 1.08e-111 337.0
Mimi7g01217 ACH,WGDA 49 281 IDZ gene family AT5G03150 70.513 9.23e-116 346.0
Mimi6g01617 . 91 503 IDZ gene family AT5G03150 40.898 2.69e-67 222.0
Mimi5g01557 . 23 344 IDZ gene family AT3G50700 54.006 1.69e-108 327.0
Mimi4g00886 ACH,WGDA 17 342 IDZ gene family AT1G55110 56.56 2.46e-118 355.0
Mimi4g01470 . 21 369 IDZ gene family AT1G55110 53.889 1.18e-107 324.0
Mimi1g02401 . 1 497 IDZ gene family AT5G66730 53.645 1.60e-162 469.0
Mimi1g02863 ACH 51 261 IDZ gene family AT5G03150 72.038 6.44e-108 325.0
Mimi1g02930 ACH 50 496 IDZ gene family AT5G03150 47.412 6.05e-127 379.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi zf-C2H2 0.0046 CL0361 TF C2H2