AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02224 ATGGTGGCACTCATACCATATATCACAGCTGGCGATCCTGATCTATCAACAACAGCAGAAGCATTGAAGGTGCTTGACACTTGTGGATCAGATATAATTGAATTGGGTGTTCCCTATTCTGATCCGTTGGCTGATGGACCAGTTATCCAGGCTGCAGCCACACGTGCATTGGCAAGAGGGACAAATCTCGACGCAATTCTTAAAATGTTGAATGAGGTGATACCACAATTATCATGTCCAATTGCTTTGTTCACCTATTACAATCCAATTCTTAAGCGTGGAGTCGAGAAGTTCATTGTTACTGTGAAAGAAGTTGGAGTACATGGACTTGTGGTGCCTGATGTCCCTCTGGAGGAAACTGAGCTCTTAAGACGGGAAGCTTCTAAGCATAACATCGAGTTGGTACTATTAACAACACCCACTACTCCTCGAGAGAGAATGAAAGCAATCGTTGAAGCTACAGAGGGATTTCTGTACCTTGTGAGTTCTGTTGGAGTGACAGGGGCTCGTACTTCTGTAAGTGGAAAGGTTCAATCTCTCCTGCAAGAAATCAAAGCGGAATCAAGTAAGCCTGTGGCTGTTGGCTTTGGTATATCAAAACCAGAGCATGTGGCGGGATGGGGAGCTGATGGGGTGATTGTGGGCAGTGCTGTGGTCAAAATATTAGGTGAAGCAGGGTCCCCTGAAGAAGGCCTTAAAGAACTTGAAGGGTTCATAAAATCTTTAAAATCTGCATTGATTTGA 744 44.49 MVALIPYITAGDPDLSTTAEALKVLDTCGSDIIELGVPYSDPLADGPVIQAAATRALARGTNLDAILKMLNEVIPQLSCPIALFTYYNPILKRGVEKFIVTVKEVGVHGLVVPDVPLEETELLRREASKHNIELVLLTTPTTPRERMKAIVEATEGFLYLVSSVGVTGARTSVSGKVQSLLQEIKAESSKPVAVGFGISKPEHVAGWGADGVIVGSAVVKILGEAGSPEEGLKELEGFIKSLKSALI 247
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02224 247 ProSitePatterns Tryptophan synthase alpha chain signature. 33 46 IPR018204 GO:0004834(InterPro)
Mimi16g02224 247 NCBIfam tryptophan synthase subunit alpha 3 243 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Mimi16g02224 247 FunFam Tryptophan synthase alpha chain, chloroplastic 1 247 - -
Mimi16g02224 247 Gene3D Aldolase class I 1 247 IPR013785 -
Mimi16g02224 247 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 2 246 IPR002028 GO:0000162(PANTHER)|GO:0004834(InterPro)|GO:0004834(PANTHER)|GO:0005829(PANTHER)|GO:0006568(InterPro)|GO:0009507(PANTHER)
Mimi16g02224 247 CDD Tryptophan-synthase-alpha 3 243 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Mimi16g02224 247 Pfam Tryptophan synthase alpha chain 3 245 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Mimi16g02224 247 SUPERFAMILY Ribulose-phoshate binding barrel 3 227 IPR011060 -
Mimi16g02224 247 Hamap Tryptophan synthase alpha chain [trpA]. 1 245 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02224 K01695 tryptophan synthase alpha chain [EC:4.2.1.20]