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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02229 ATGGCGATAATCCACCATAATTTGCTCACAAATAACCTTCAATTGATTCCCAGTAAACCTCTACACAACAGTCTCAAACACATACCTCCAAAGAATCACATCTTCATATGTTCTACATCATCATTAGATAAAAAGTTTTACAGCAGAATATCGCTCAGTACAAATGGAGGCCATGTTAAATCATCGCTTGATTACAATCATACCGGAGTTAATTACACCAACAACGATCATTATGAGTACGAGAAGGGTTTAGTCGGAAACGGCCAGCAATACCCTAGACCGATTGAAGTTCCATGGAAGAAGGAATTGTGTAATTCCGTTCAACTCATCGGAACTGTTGGCACTCCGGTTGAGTTTAAGCAGCTTAGCTCCGGGAAGGTTCTCGCATGGTGTCGCCTCGCCGTTAGGAAATCGGCGACTGATACTACATGGATCAATTTGACATTTTGGGATGATATGGCACATATTGCTTCTCTACATGTGGAAAAAGGACAACAAATATATGTATCGGGTCGCCTTGTTTCAGATACGGTTGATAGTGATGATGGGAAGCAACAAACATACTATAAGGTTGTTGTTCAAGACCTAAAATTTGTTGAGAGAAGCGCGCCTTCAGCAGCATCCAATGATGGAAACTTCAACTACAATTACAATTCCAATTCCAACTCGGGCTATATGACAACAGGCAATTACTTTTATGAAATATACCCAAAGCAAAAGAATTATGCAGCAAATGGTACAGGATCTGTAGAGGAACTATGGCAAGCTTTTTTTGCTAATCCTGTTGATTGGTGGGATAATAGGAAGAACAAGAGAAGCCCTAATTATCCAGATTTCAAGCACAAAGACACGGGTGAAGCATTATGGGTCGAAGGGAGGATGAATCCATCTTGGGTTAAATCTCAGTTATCGGTGTTAGATTCACGAATGGAATCTTTTCATGATCAAACGCGCTCAGATTCCATGTTTGGAGACAATCTGACAACTTATTAA 993 40.28 MAIIHHNLLTNNLQLIPSKPLHNSLKHIPPKNHIFICSTSSLDKKFYSRISLSTNGGHVKSSLDYNHTGVNYTNNDHYEYEKGLVGNGQQYPRPIEVPWKKELCNSVQLIGTVGTPVEFKQLSSGKVLAWCRLAVRKSATDTTWINLTFWDDMAHIASLHVEKGQQIYVSGRLVSDTVDSDDGKQQTYYKVVVQDLKFVERSAPSAASNDGNFNYNYNSNSNSGYMTTGNYFYEIYPKQKNYAANGTGSVEELWQAFFANPVDWWDNRKNKRSPNYPDFKHKDTGEALWVEGRMNPSWVKSQLSVLDSRMESFHDQTRSDSMFGDNLTTY 330
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02229 330 Pfam Single-strand binding protein family 105 198 IPR000424 GO:0003697(InterPro)
Mimi16g02229 330 SUPERFAMILY Nucleic acid-binding proteins 105 303 IPR012340 -
Mimi16g02229 330 ProSiteProfiles Single-strand binding (SSB) domain profile. 103 200 IPR000424 GO:0003697(InterPro)
Mimi16g02229 330 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 61 315 IPR011344 GO:0003697(PANTHER)|GO:0003697(InterPro)|GO:0006260(InterPro)|GO:0006264(PANTHER)|GO:0009295(PANTHER)|GO:0042645(PANTHER)|GO:0051096(PANTHER)
Mimi16g02229 330 CDD SSB-OBF 107 198 IPR000424 GO:0003697(InterPro)
Mimi16g02229 330 NCBIfam single-stranded DNA-binding protein 104 238 IPR011344 GO:0003697(InterPro)|GO:0006260(InterPro)
Mimi16g02229 330 Gene3D - 103 228 IPR012340 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02229 K03111 single-strand DNA-binding protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr12:10339797 Mimi16g02229 Mimi-Chr16:85974500 dispersed