Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mimi16g02229 | ATGGCGATAATCCACCATAATTTGCTCACAAATAACCTTCAATTGATTCCCAGTAAACCTCTACACAACAGTCTCAAACACATACCTCCAAAGAATCACATCTTCATATGTTCTACATCATCATTAGATAAAAAGTTTTACAGCAGAATATCGCTCAGTACAAATGGAGGCCATGTTAAATCATCGCTTGATTACAATCATACCGGAGTTAATTACACCAACAACGATCATTATGAGTACGAGAAGGGTTTAGTCGGAAACGGCCAGCAATACCCTAGACCGATTGAAGTTCCATGGAAGAAGGAATTGTGTAATTCCGTTCAACTCATCGGAACTGTTGGCACTCCGGTTGAGTTTAAGCAGCTTAGCTCCGGGAAGGTTCTCGCATGGTGTCGCCTCGCCGTTAGGAAATCGGCGACTGATACTACATGGATCAATTTGACATTTTGGGATGATATGGCACATATTGCTTCTCTACATGTGGAAAAAGGACAACAAATATATGTATCGGGTCGCCTTGTTTCAGATACGGTTGATAGTGATGATGGGAAGCAACAAACATACTATAAGGTTGTTGTTCAAGACCTAAAATTTGTTGAGAGAAGCGCGCCTTCAGCAGCATCCAATGATGGAAACTTCAACTACAATTACAATTCCAATTCCAACTCGGGCTATATGACAACAGGCAATTACTTTTATGAAATATACCCAAAGCAAAAGAATTATGCAGCAAATGGTACAGGATCTGTAGAGGAACTATGGCAAGCTTTTTTTGCTAATCCTGTTGATTGGTGGGATAATAGGAAGAACAAGAGAAGCCCTAATTATCCAGATTTCAAGCACAAAGACACGGGTGAAGCATTATGGGTCGAAGGGAGGATGAATCCATCTTGGGTTAAATCTCAGTTATCGGTGTTAGATTCACGAATGGAATCTTTTCATGATCAAACGCGCTCAGATTCCATGTTTGGAGACAATCTGACAACTTATTAA | 993 | 40.28 | MAIIHHNLLTNNLQLIPSKPLHNSLKHIPPKNHIFICSTSSLDKKFYSRISLSTNGGHVKSSLDYNHTGVNYTNNDHYEYEKGLVGNGQQYPRPIEVPWKKELCNSVQLIGTVGTPVEFKQLSSGKVLAWCRLAVRKSATDTTWINLTFWDDMAHIASLHVEKGQQIYVSGRLVSDTVDSDDGKQQTYYKVVVQDLKFVERSAPSAASNDGNFNYNYNSNSNSGYMTTGNYFYEIYPKQKNYAANGTGSVEELWQAFFANPVDWWDNRKNKRSPNYPDFKHKDTGEALWVEGRMNPSWVKSQLSVLDSRMESFHDQTRSDSMFGDNLTTY | 330 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mimi16g02229 | 330 | Pfam | Single-strand binding protein family | 105 | 198 | IPR000424 | GO:0003697(InterPro) | |
| Mimi16g02229 | 330 | SUPERFAMILY | Nucleic acid-binding proteins | 105 | 303 | IPR012340 | - | |
| Mimi16g02229 | 330 | ProSiteProfiles | Single-strand binding (SSB) domain profile. | 103 | 200 | IPR000424 | GO:0003697(InterPro) | |
| Mimi16g02229 | 330 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN | 61 | 315 | IPR011344 | GO:0003697(PANTHER)|GO:0003697(InterPro)|GO:0006260(InterPro)|GO:0006264(PANTHER)|GO:0009295(PANTHER)|GO:0042645(PANTHER)|GO:0051096(PANTHER) | |
| Mimi16g02229 | 330 | CDD | SSB-OBF | 107 | 198 | IPR000424 | GO:0003697(InterPro) | |
| Mimi16g02229 | 330 | NCBIfam | single-stranded DNA-binding protein | 104 | 238 | IPR011344 | GO:0003697(InterPro)|GO:0006260(InterPro) | |
| Mimi16g02229 | 330 | Gene3D | - | 103 | 228 | IPR012340 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mimi16g02229 | K03111 | single-strand DNA-binding protein |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Mimi | Mimi-Chr12:10339797 | Mimi16g02229 | Mimi-Chr16:85974500 | dispersed |