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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02249 ATGTCGCAGCTGATGCTGCATCATCAACCACCACCAGCAGTGCCATCCCTATCCCGCACCCAAGAAGAACAAAAACAGGGAGTGCACAATCAAGAATCAAGAATGGCATCTGGTTGTAGAGGAAAGAATTCATGGCCGGAGCTTGTAGGAGCAGACGGAGAAGCCGCGGCTGCTACAATCGAGCGACAGAACCCACGTGTCAATGCTATTGTGATATTGGATGGTACTAGTACCACTAAGGACTTACGATGCGACCGTGTGTGGGTGTGGGTGAACTCTGACGGAGTGGTGATTCGAACCCCTATCATTCAATGA 315 50.48 MSQLMLHHQPPPAVPSLSRTQEEQKQGVHNQESRMASGCRGKNSWPELVGADGEAAAATIERQNPRVNAIVILDGTSTTKDLRCDRVWVWVNSDGVVIRTPIIQ 104
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02249 104 PRINTS Potato inhibitor I signature 69 80 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02249 104 PRINTS Potato inhibitor I signature 81 91 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02249 104 PRINTS Potato inhibitor I signature 44 57 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02249 104 MobiDBLite consensus disorder prediction 14 38 - -
Mimi16g02249 104 SUPERFAMILY CI-2 family of serine protease inhibitors 38 103 IPR036354 -
Mimi16g02249 104 MobiDBLite consensus disorder prediction 1 45 - -
Mimi16g02249 104 Pfam Potato inhibitor I family 42 103 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02249 104 ProSitePatterns Potato inhibitor I family signature. 45 56 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02249 104 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 37 103 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02249 104 Gene3D Trypsin Inhibitor V, subunit A 26 103 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02249 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:86358562 Mimi16g02271 Mimi-Chr16:86781241 dispersed
Mimi Mimi-Chr16:86358562 Mimi16g02250 Mimi-Chr16:86366327 tandem
Mimi Mimi-Chr16:86358562 Mimi16g02268 Mimi-Chr16:86675887 wgd