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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02268 ATGATCAGTCGGCCTGCCACCATGAACTCTGTCATGTTTTCCGCTGATATTGAAGGAGGGCTTCATTTGCTGGGTGTGATTCAGTTTATGGATAGATTTGCTGACCAAATGGGAACATTTGAAAAACTGAAAGCTGAAAGTACATTGCGTTACTCAAAAGTACACCCAATCCCAATACTTGCTCTATTTATACCCCATGCTATTCGTCTTCTTCAGTGCACAATCAAGAATCAAGAATGGCATCTGGTTGTAGAGATAAAGGAACTAAAATGTTTTGTTTGGATGATTAACACAGGAAAGAATTCATGGCCGGAGCTTGTAGGAGCAGACGGAGAAGCCGCGGCTGCTACAATCGAGCGACAGAACCCACGTGTCAATGCTATTGTGATATTGGATGGTACTGGTACCACTAGGGACTTTCGGTGCGACCGTGTATGGGTGTGGGTGAACTCTGACGGAGTGGTGATTCGAACCCCTATCATTCAATGA 489 44.58 MISRPATMNSVMFSADIEGGLHLLGVIQFMDRFADQMGTFEKLKAESTLRYSKVHPIPILALFIPHAIRLLQCTIKNQEWHLVVEIKELKCFVWMINTGKNSWPELVGADGEAAAATIERQNPRVNAIVILDGTGTTRDFRCDRVWVWVNSDGVVIRTPIIQ 162
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02268 162 ProSitePatterns Potato inhibitor I family signature. 103 114 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02268 162 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 98 161 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02268 162 SUPERFAMILY CI-2 family of serine protease inhibitors 96 161 IPR036354 -
Mimi16g02268 162 Pfam Potato inhibitor I family 100 161 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02268 162 PRINTS Potato inhibitor I signature 102 115 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02268 162 PRINTS Potato inhibitor I signature 139 149 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02268 162 PRINTS Potato inhibitor I signature 127 138 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02268 162 Gene3D Trypsin Inhibitor V, subunit A 95 161 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02268 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:86675887 Mimi16g02271 Mimi-Chr16:86781241 dispersed
Mimi Mimi-Chr16:86675887 Mimi16g02269 Mimi-Chr16:86680577 tandem
Mimi Mimi-Chr16:86358562 Mimi16g02268 Mimi-Chr16:86675887 wgd