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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02269 ATGTCAAGCGTTTGTGAAGGTGATATAGGAAAGAGTTCATGGCCGGAGCTTGTAGGGGCAAGGGGAGAAGTAGCAGAAGCTACTATCGAGCGTGAGAATCCACGGGTCAATGCTATTGTGGTAGTGGAGGGAAGGGATATGGTCATAACCGATGTTCAATGCGACCGTGTGTGGGTGTGGGTAAACTCTAATGGGGTGGTGGTTCGAACTCCTGGCATTGGCTAA 225 50.22 MSSVCEGDIGKSSWPELVGARGEVAEATIERENPRVNAIVVVEGRDMVITDVQCDRVWVWVNSNGVVVRTPGIG 74
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02269 74 Gene3D Trypsin Inhibitor V, subunit A 3 73 - -
Mimi16g02269 74 SUPERFAMILY CI-2 family of serine protease inhibitors 10 74 IPR036354 -
Mimi16g02269 74 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 7 74 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02269 74 ProSitePatterns Potato inhibitor I family signature. 14 25 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02269 74 Pfam Potato inhibitor I family 11 74 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02269 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:86680577 Mimi16g02276 Mimi-Chr16:86824964 dispersed
Mimi Mimi-Chr16:86675887 Mimi16g02269 Mimi-Chr16:86680577 tandem
Mimi Mimi-Chr16:86680577 Mimi16g02270 Mimi-Chr16:86742645 tandem