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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02272 ATGGCAACTGGTTGTAGAGGAAAGAGTTCATGGCCAGAGCTTGTAGGAGCAGACGGAGAAGCTGCGGCTGCTACAATCGAGCGAGAGAATCCACGGGTCGATGCTATCGTGATATTGGATGGAACTGGTACCCCTAGGGACTTTCAGTGCGACCGTGTGTGGGTGTGGGTGAACTCTGATGGAGTGGTGATTCGAACCCCTATCATTCGATGA 213 52.58 MATGCRGKSSWPELVGADGEAAAATIERENPRVDAIVILDGTGTPRDFQCDRVWVWVNSDGVVIRTPIIR 70
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02272 70 SUPERFAMILY CI-2 family of serine protease inhibitors 4 69 IPR036354 -
Mimi16g02272 70 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02272 70 Pfam Potato inhibitor I family 8 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02272 70 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 4 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Mimi16g02272 70 Gene3D Trypsin Inhibitor V, subunit A 1 69 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02272 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:86366327 Mimi16g02272 Mimi-Chr16:86787465 dispersed
Mimi Mimi-Chr16:86742645 Mimi16g02272 Mimi-Chr16:86787465 dispersed
Mimi Mimi-Chr16:86787465 Mimi16g02277 Mimi-Chr16:86829770 dispersed
Mimi Mimi-Chr16:86781241 Mimi16g02272 Mimi-Chr16:86787465 tandem
Mimi Mimi-Chr16:86787465 Mimi16g02273 Mimi-Chr16:86794837 tandem