AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00041 ATGTCATCTTCCTCCCTAATTCCTCTCACCTCCACATTCACCAGTCTTCCATCCACAAATACCAATCGAGCCATCAAGACTCGAACCAACCAAACTCATGGGTTCAGAGTCTCATGCAACCACGCACCAGATAACCAAAACGACAAGAAACTCATACTCCCTGAAGCCCAGAAGCTCCTACTGCCCAATGTAGACCGTAGGAACCTGCTCGTGGGGCTCGGTGGTCTCTACACCGCTACGAACCTCACTTCCAAGCCATTGGCTTTGGCTGCACCCATCACAGCTCCAGATATCACGTCTATATGCAAAGATGCCAGTGCTGGCATCGGCAACCAAGACAAGGCTCTACGGTCACGAAAATGCTGTCCACCAAGCCTCGGGAAGACGATCAAAAACTTCGTCTTCCCGACTGACAAGAAGGTCAGGATGCGATGGCCCGCTCACGCCGGGACGAAAGAGCAGGTGGACAAATACCGAGCCGCGATCCAAGCGATGCGAGATCTCCCGGATGACCACCCGCACAGCTTCGTGAGCCAAGCTAAGATCCACTGTGCCTACTGCAACGGAGGTTACACGCAGGTCGATAGCGGTTTTGCGGACAAAGAGATCCAGATTCACAACTCGTGGCTCTTCTTCCCGTTCCACCGCTGGTACCTCTATTTCTATGAGAGAATCCTTGGGAAGCTGATAAAAGATCCAGATTTCGCCTTACCGTTCTGGAAGTGGGATGAACCGGCCGGAATGCCGATCCCGGAGATGTTTGTGCCAGAAACAATTGATGGTAAACCGAACCCGTTGTATGATGTTTACCGGAGTGCCGATCATATCAAAGACGGAATCGTTGATCTTGACTATAGAGAAATTAATGGTAAACTCGATAAAGATATCCCTTATAAGCAACAGGTATTATGCAATCTGAGTACGGTTTACCGTGATTTGGTTCGTAACGGTGGTGACACATTGAGCTTCTTCGGTGGCGTGTATGTTGCCGGTAATGATCCGGTCAAGAACGGTGCCGAATCTGTCGGGTCGGTCGAAGCAGGATCTCACACGGCCGTGCACCGATGGGTCGGTGACTCAAAAAACCCAAATGGCGAGGACATGGGTAACTTCTACTCCGCGGGGTATGACCCCGCGTTCTACATTCATCACTCGAATGTGGATCGAATGTGGAAGCTATGGAAGGATTTGCGTCTTCCGGGACACGTTGACCCAACCGAACCGGACTGGCTGGACGCTTCTTATGTGTTCTATGACGAGAATGAGGACCTTGTGCGCGTGTATAACAGGGACTCGGTTAGCCTAGACAAGCTCAAGTATAACTATATTGAGAACTCGAAGGAGGTCTTCCCATGGCGCAACAGTCGGCCAGCGAAGCGTAACAAGAACTTGCAGACTGCAACCACCACTGAAGTCAAGAAGGTGGACCAGATTAAGTTCCCAGTGAAACTGGACAAGATCTTGAAGGTTGGTGTGAAGCGACCCGCGGTGAACCGAAGCGCTGAAGAGAAGGTGAAAGCGAATGAAGTGTTGGTGATCAAGGGGATTAGGTATGATAGTGAGAAGTTTGTGAAGTTTGATGTGTTTGTGAATGACAAACTCAAAGATGGTGTGTTCACTACGCCTTGCGATCCGGAGTACGCAGGTGGGTTCGCTCAGATTCCGCATGGTGGTATGAAAAACATGTTTATGGGGAGTTCAGCTCGGTTTGGGCTAACCGAGTTGTTGGAGGACACAAACACAGATGGGGATGAGTATGCGACCGTGACATTGGTGCCGAGGACCGGGTGTGATGATCTAACCGTTGGCAAAATCGAGATCATTTTGGTTCCGGTGGCTGCAGTCTAA 1848 50.49 MSSSSLIPLTSTFTSLPSTNTNRAIKTRTNQTHGFRVSCNHAPDNQNDKKLILPEAQKLLLPNVDRRNLLVGLGGLYTATNLTSKPLALAAPITAPDITSICKDASAGIGNQDKALRSRKCCPPSLGKTIKNFVFPTDKKVRMRWPAHAGTKEQVDKYRAAIQAMRDLPDDHPHSFVSQAKIHCAYCNGGYTQVDSGFADKEIQIHNSWLFFPFHRWYLYFYERILGKLIKDPDFALPFWKWDEPAGMPIPEMFVPETIDGKPNPLYDVYRSADHIKDGIVDLDYREINGKLDKDIPYKQQVLCNLSTVYRDLVRNGGDTLSFFGGVYVAGNDPVKNGAESVGSVEAGSHTAVHRWVGDSKNPNGEDMGNFYSAGYDPAFYIHHSNVDRMWKLWKDLRLPGHVDPTEPDWLDASYVFYDENEDLVRVYNRDSVSLDKLKYNYIENSKEVFPWRNSRPAKRNKNLQTATTTEVKKVDQIKFPVKLDKILKVGVKRPAVNRSAEEKVKANEVLVIKGIRYDSEKFVKFDVFVNDKLKDGVFTTPCDPEYAGGFAQIPHGGMKNMFMGSSARFGLTELLEDTNTDGDEYATVTLVPRTGCDDLTVGKIEIILVPVAAV 615
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00041 615 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 377 388 IPR002227 GO:0016491(InterPro)
Mimi17g00041 615 PRINTS Tyrosinase copper-binding domain signature 349 360 IPR002227 GO:0016491(InterPro)
Mimi17g00041 615 PRINTS Tyrosinase copper-binding domain signature 376 394 IPR002227 GO:0016491(InterPro)
Mimi17g00041 615 PRINTS Tyrosinase copper-binding domain signature 206 223 IPR002227 GO:0016491(InterPro)
Mimi17g00041 615 PRINTS Tyrosinase copper-binding domain signature 237 242 IPR002227 GO:0016491(InterPro)
Mimi17g00041 615 PIRSF PPO-plant 1 611 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Mimi17g00041 615 Gene3D - 91 448 IPR008922 -
Mimi17g00041 615 ProSitePatterns Tyrosinase CuA-binding region signature. 206 223 IPR002227 GO:0016491(InterPro)
Mimi17g00041 615 Pfam Common central domain of tyrosinase 174 396 IPR002227 GO:0016491(InterPro)
Mimi17g00041 615 Pfam Protein of unknown function (DUF-B2219) 480 607 IPR022740 GO:0004097(InterPro)
Mimi17g00041 615 SUPERFAMILY Di-copper centre-containing domain 119 442 IPR008922 -
Mimi17g00041 615 PANTHER TYROSINASE FAMILY MEMBER 64 576 IPR050316 -
Mimi17g00041 615 Pfam Polyphenol oxidase middle domain 404 457 IPR022739 GO:0004097(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00041 K00422 polyphenol oxidase [EC:1.10.3.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:1683496 Mimi17g00405 Mimi-Chr17:13457593 dispersed
Mimi Mimi-Chr17:1683496 Mimi17g00042 Mimi-Chr17:1746578 tandem