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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00043 ATGGCGATCATAGAAATGCGAGTACATGTTGATTGTCCAGGATGCGAGAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGGGTGGAGAACGTAGATATAGACATGGGTTTACAAAAGGTGACAGTCACAGGAATCGCTGATGAGAAGAAGGTGTTAAAGACGGTGAGAAAGACTGGCAGGCGTGCTGAGATATGGAACATACCCTACAACCCTGACATTCGTACGCACAACTACAACGTTAACCAGTATGCTCAACAACAACAAAATGGTGGTTTGGGTCCGGCAACATTCTACACCCGACAACCATCGTCTGCATCATCTTACAACTACTTCAAACATGGTTGTGACAACCACTATGTTTATAACCCGATCCAGTCCTCGGGCTTGATTGATCATCAAGTTGGTGCTACCTTTAGCGATGATAATACCCATGCTGCATGTAAAATTATGTAG 456 44.08 MAIIEMRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGIADEKKVLKTVRKTGRRAEIWNIPYNPDIRTHNYNVNQYAQQQQNGGLGPATFYTRQPSSASSYNYFKHGCDNHYVYNPIQSSGLIDHQVGATFSDDNTHAACKIM 151
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00043 151 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 151 IPR045181 GO:0046872(InterPro)
Mimi17g00043 151 CDD HMA 5 64 IPR006121 GO:0046872(InterPro)
Mimi17g00043 151 SUPERFAMILY HMA, heavy metal-associated domain 3 67 IPR036163 GO:0046872(InterPro)
Mimi17g00043 151 Gene3D - 2 65 - -
Mimi17g00043 151 Pfam Heavy-metal-associated domain 7 61 IPR006121 GO:0046872(InterPro)
Mimi17g00043 151 ProSiteProfiles Heavy-metal-associated domain profile. 1 64 IPR006121 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00043 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr10:45896204 Mimi17g00043 Mimi-Chr17:1784837 dispersed
Mimi Mimi-Chr17:1784837 Mimi17g00403 Mimi-Chr17:13326050 dispersed
Mimi Mimi-Chr17:1784837 Mimi15g01474 Mimi-Chr15:78526714 transposed