AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00099 ATGTGGATGCAATGTGTTCTTCGCAATCTTCTTCGTCACGGTTGTTCTATTCTCATGTTCTTCAGCACTCAAGACGGCAATGTTCGCCCTAGGTGTACTCGCGTTCAGCCTCTCAGTCCGTTTTCTAAGGTGAAAGGATTGCCGTTCAATCGATACTCGTGGTTAACGACGCATAATTCGTTCGCTAAATTAGGAGAGAAGTCGGCTACCGGTTCCGTCGTTCTAGCTCCGACGAACCAGCAGGATTCTGTTAGTTCTCAGCTAGATAATGGTGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGTCATTCCTTTGGTGGCAAATGCTTTAACTACACAGCTTTTCAACCTGCTATCAATGTTCTGAAAGAGATTCGATTTTTCCTAGAAAAGAATCCAACTGAAATTATAACGATATTCATTGAAGATTATGTTACCTCACCAAAGGGTCTAACGAATGTCTTCAATGCTTCTGGTCTGACAAAGTACTGGTTTCCAGCTGCCCAGATGCCAAGTGATGGTAGGGATTGGCCCACGGTTGACTCCATGGTTCGTCAAAATCATCGTTTGGTAGTTTTCACTTCCAAATCTTCTAAACAGGCTACTGAAGGGATTGCATATGAGTGGAAATACTTGGTTGAAAATCAATATGGAACTGATGGGATGAAAAGTGGTTTGTGCCCTAACCGTGCTGAGTCAGCAGCAATGAACACTACTTCAAGATCACTGGTTTTAATGAACTATTTCCCGGATACCCCTGATGTTACTCAAGCTTGCAAGCACAATTCAGACGCATTAATAAATATGGTGAATACATGCCATGATGTAGCTGGTAAACGTTGGCCTAACTTCATTGCTGTTGACTTCTACAAGAGGAGCAATGGTGGGGGTGCACCTGCTGCTGTAGATATGGCTAATGGTCAGCTGGCGTGTGGTTGCAGCACCATTGCAGCATGCAGGCCAAACACGACCTTTGGAGCCTGTAAACTCCCGGAGGCTGGGGCTGCTCCAACCCCAACTTCAGCAATAAAAAGCTCTGGGAGCATCAGTGGTCACCCGGGTCAACTTGGATGGTTGTTTGGATCAGGTCTGATTGCTATAACTTTGTGTTTTTAA 1137 44.59 MWMQCVLRNLLRHGCSILMFFSTQDGNVRPRCTRVQPLSPFSKVKGLPFNRYSWLTTHNSFAKLGEKSATGSVVLAPTNQQDSVSSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIRFFLEKNPTEIITIFIEDYVTSPKGLTNVFNASGLTKYWFPAAQMPSDGRDWPTVDSMVRQNHRLVVFTSKSSKQATEGIAYEWKYLVENQYGTDGMKSGLCPNRAESAAMNTTSRSLVLMNYFPDTPDVTQACKHNSDALINMVNTCHDVAGKRWPNFIAVDFYKRSNGGGAPAAVDMANGQLACGCSTIAACRPNTTFGACKLPEAGAAPTPTSAIKSSGSISGHPGQLGWLFGSGLIAITLCF 378
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00099 378 SUPERFAMILY PLC-like phosphodiesterases 46 314 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Mimi17g00099 378 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 48 156 - -
Mimi17g00099 378 PANTHER UNCHARACTERIZED 26 326 IPR051057 GO:0008081(PANTHER)
Mimi17g00099 378 CDD PI-PLCc-At5g67130-like 39 313 - -
Mimi17g00099 378 Gene3D Phosphatidylinositol (PI) phosphodiesterase 40 305 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00099 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr11:15020973 Mimi17g00099 Mimi-Chr17:3032553 dispersed
Mimi Mimi-Chr11:15110313 Mimi17g00099 Mimi-Chr17:3032553 dispersed
Mimi Mimi-Chr17:3032553 Mimi6g00815 Mimi-Chr6:43534191 dispersed
Mimi Mimi-Chr17:3032553 Mimi11g00301 Mimi-Chr11:14972912 transposed