AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00107 ATGTCAGCTTTCCACGTCAAGTTCCCGGTACCCAATTCATTTCTCAATCCCATGACCGCCATGAGTTCCACCAGGCTGTATGCAACCACCGTACCGGCTCCTGTTCCGGCGCCGGAGATGACTGCAGACAGGCTGGAACCCAGGGTTGAAAAGAAAGACGGGTATTATGTGGTGAAGGAAAAGTTCCGGGCGGGTATAAATCCGCAAGAAAAGGTGAAGATTGGCGGTGAACCGATGAAGCTGTTCATGGAAAATGGGATTGAAGATCTTGCAAAGATTCCGTTTGAAGAACTGGATAAATCTAAGGATTATAAAGATGATGTTGATGTTAGACTCAAATGGCTTGGATTGTTCCATCGGAGGAAACATCAATATGGTCGGTTTATGATGAGGTTGAAGCTCCCAAATGGCATAACAACTAGTGCACAAACCCGTTTCTTAGCCAGTGTGATAAAGCAGTATGGTGAGCACGGGTGTGCTGATATTACCACACGCCAAAACTGGCAAATTCGAGTTGGAAACCCTCTTGCAGGAATCGATCCACACGAAATTGTGGACACGAGGAGGCCGTATTTGAACTTGCTATCACAATTCATCACTTCGAATTCTCGAGGGAATCCTGAATTTACAAACTTAGGGAATAGGCAAAAGACTAGAATGATGTGGTTGATTGATGAACTTGGTGTAGAAGGTTTTCGATCAGAAGTGGTAAAGAGAATGCCGAATCAAGCATTGGAGAGATCATCTAATGAGGACCTCATTGATCACAAATGGGAAAGAAGGGATTACTTTGCACGGTTAGCCGACGAGTATGGCTCAGGAGAGCTTCGACTAACCGTGGAACAAAACATCATAATCCCAAATGTACAAAACTCAAAAGTTGAAGCTTTGCTTGAGGAGTCGCTTTTAAAAGAAAAGTTCCTACCCGAGCCACCTATCTTGATGAAAGGTTAG 954 44.44 MSAFHVKFPVPNSFLNPMTAMSSTRLYATTVPAPVPAPEMTADRLEPRVEKKDGYYVVKEKFRAGINPQEKVKIGGEPMKLFMENGIEDLAKIPFEELDKSKDYKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGITTSAQTRFLASVIKQYGEHGCADITTRQNWQIRVGNPLAGIDPHEIVDTRRPYLNLLSQFITSNSRGNPEFTNLGNRQKTRMMWLIDELGVEGFRSEVVKRMPNQALERSSNEDLIDHKWERRDYFARLADEYGSGELRLTVEQNIIIPNVQNSKVEALLEESLLKEKFLPEPPILMKG 317
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00107 317 Gene3D - 44 197 - -
Mimi17g00107 317 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 45 171 IPR036136 GO:0016491(InterPro)
Mimi17g00107 317 Gene3D Sulfite Reductase Hemoprotein;Domain 2 259 308 - -
Mimi17g00107 317 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 264 300 IPR005117 GO:0016491(InterPro)
Mimi17g00107 317 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 121 171 IPR005117 GO:0016491(InterPro)
Mimi17g00107 317 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 264 317 IPR051329 -
Mimi17g00107 317 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 221 300 IPR036136 GO:0016491(InterPro)
Mimi17g00107 317 Gene3D Sulfite Reductase Hemoprotein, domain 1 212 258 IPR045854 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00107 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
421429 Mimi17g00107 Mimi9g01610
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:3154907 Mimi17g00111 Mimi-Chr17:3197799 proximal
Mimi Mimi-Chr17:3154907 Mimi9g01610 Mimi-Chr9:60810346 wgd