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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00118 ATGCCTTCACTTTACGGCTCGGCGGAGATATCAAAATCCGATGAATACCTCCATGAAATCATCGGATTCATAAGAGTTCACAAAGATGGCCGCTGTGAAAGATTACTCGGAAACAATCTGGTGCCTGCCGGAACTGATTCTTCCACTGGCGTCCGATCAAAAGACGTCGTCGTCTCACCGGAAACCAACGTCTCTGCAAGGCTTTACGTTCCAACAACCGCCACCGCTGATCGGAAACTGCCTCTTATGGTTTACTTTCACGGTGGTGGATTTGTGTTCGAGTCCACCATGACTACTTTCTACCATTCGACACTCAACCATCTAACCGCGAAGTCAAATGTTATCACGGTTTCTGTTGAATACAGGCTGGGACCGGAGTATCTGGTCCCAGCTTGTTATAACGACTCATGGGAAGCGATCAAATGGGTCGCTTCTCACCGTAGAGGTCATGATCTTGATGATCTTGACCCATGGTTAAAGGAATATGCTGATTTTAGCAAAATGTTTTTTGCTGGGGATAGTGCAGGGGCGAACATTGCCCATAACATGGCAATTCGGTTCGGTTTAAAACCGAACCGGATAGTTGGGATAGATCTGAAGGGTGTTATTCTTATCCACCCGTATTTTGGAGGAAAAGATCCGATTGGAACCGAGCTTGGGAAACATAAGCAGTTGAAAGCGTTTACTGATCAGTTCTGGAATTTGGTAAATCGTTCAGAGAGTGGGCTGGATGACCCGTTGTTTAACCCGGAAAAGGACCCGAATCTTTCGGGTTTGGGTTGCTCCAAGATCCTGTTACTTGTAGCAGAGAAAGATTCATTTAGAGACAGGGGTTTGCTTTACAAAGAATTGATGGAGAAAAGTGGATGGGTTGGAAAATTGGAGATGATGGAGTCCAAAGATGAAGATCATGCTTTCTTTTTGTTTGATCATTTTTGTGAGAGTACTTGTAGCTTTTACAACACAATTTCTGCCTTCATCAACCAGATTGACGATGATTAA 1002 44.51 MPSLYGSAEISKSDEYLHEIIGFIRVHKDGRCERLLGNNLVPAGTDSSTGVRSKDVVVSPETNVSARLYVPTTATADRKLPLMVYFHGGGFVFESTMTTFYHSTLNHLTAKSNVITVSVEYRLGPEYLVPACYNDSWEAIKWVASHRRGHDLDDLDPWLKEYADFSKMFFAGDSAGANIAHNMAIRFGLKPNRIVGIDLKGVILIHPYFGGKDPIGTELGKHKQLKAFTDQFWNLVNRSESGLDDPLFNPEKDPNLSGLGCSKILLLVAEKDSFRDRGLLYKELMEKSGWVGKLEMMESKDEDHAFFLFDHFCESTCSFYNTISAFINQIDDD 333
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00118 333 ProSitePatterns Lipolytic enzymes G-D-X-G family, putative serine active site. 168 180 IPR033140 -
Mimi17g00118 333 Pfam alpha-beta hydrolase fold 83 307 IPR013094 GO:0016787(InterPro)
Mimi17g00118 333 PANTHER ARYLACETAMIDE DEACETYLASE 23 312 IPR050466 -
Mimi17g00118 333 ProSitePatterns Lipolytic enzymes G-D-X-G family, putative histidine active site. 83 99 IPR002168 GO:0016787(InterPro)
Mimi17g00118 333 Gene3D alpha-beta hydrolase 16 329 IPR029058 -
Mimi17g00118 333 SUPERFAMILY alpha-beta-Hydrolases 47 330 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00118 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:3366904 Mimi9g01600 Mimi-Chr9:60369484 dispersed
Mimi Mimi-Chr17:3351584 Mimi17g00118 Mimi-Chr17:3366904 tandem
Mimi Mimi-Chr17:3366904 Mimi17g00119 Mimi-Chr17:3399839 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi19g00187 . 23 309 Carbohydrate Esterase gene family AT1G69940 53.103 3.66e-114 332.0
Mimi19g00239 . 9 587 Carbohydrate Esterase gene family AT5G53370 63.058 0.0 766.0
Mimi19g00763 . 88 135 Carbohydrate Esterase gene family AT3G14320 52.083 7.76e-13 62.8
Mimi19g00881 . 38 554 Carbohydrate Esterase gene family AT1G23200 50.76 1.27e-178 512.0
Mimi19g00882 ACH,WGDA 59 219 Carbohydrate Esterase gene family AT3G14310 28.571 4.22e-16 74.3
Mimi19g01341 . 14 470 Carbohydrate Esterase gene family AT3G14310 53.617 1.89e-155 453.0
Mimi19g01686 . 56 359 Carbohydrate Esterase gene family AT5G07430 40.461 5.62e-85 258.0
Mimi18g00303 ACH,WGDA 59 219 Carbohydrate Esterase gene family AT3G14310 26.543 2.51e-17 78.2
Mimi18g00304 . 38 554 Carbohydrate Esterase gene family AT1G23200 52.682 0.0 528.0
Mimi18g00415 . 19 422 Carbohydrate Esterase gene family AT3G02410 57.843 2.31e-176 500.0
Mimi18g01459 . 1 359 Carbohydrate Esterase gene family AT5G61570 45.73 9.91e-102 302.0
Mimi18g01480 ACH 51 216 Carbohydrate Esterase gene family AT1G53830 31.325 4.03e-21 88.2
Mimi18g02137 . 53 130 Carbohydrate Esterase gene family AT3G14320 46.835 3.85e-20 80.1
Mimi17g00117 . 77 325 Carbohydrate Esterase gene family AT3G48700 42.063 4.60e-63 199.0
Mimi17g00118 . 12 320 Carbohydrate Esterase gene family AT3G48690 43.131 6.51e-81 247.0
Mimi17g00119 ACH 12 324 Carbohydrate Esterase gene family AT3G48690 43.45 3.68e-77 237.0
Mimi17g01099 . 8 570 Carbohydrate Esterase gene family AT3G05610 48.155 0.0 587.0
Mimi17g01148 . 1 415 Carbohydrate Esterase gene family AT5G26670 65.566 0.0 589.0
Mimi17g02050 . 6 284 Carbohydrate Esterase gene family AT2G41530 80.714 7.93e-177 487.0
Mimi17g02091 . 1 612 Carbohydrate Esterase gene family AT2G26450 46.699 0.0 563.0
Mimi17g02096 ACH,WGDA 52 216 Carbohydrate Esterase gene family AT3G14310 29.091 1.79e-13 65.9
Mimi17g02361 . 52 530 Carbohydrate Esterase gene family AT4G02300 53.32 2.21e-178 512.0
Mimi17g02406 . 4 588 Carbohydrate Esterase gene family AT2G47030 38.862 1.00e-133 401.0
Mimi17g02858 . 36 257 Carbohydrate Esterase gene family AT1G68620 38.889 2.47e-46 158.0
Mimi17g02885 ACH,WGDA 79 225 Carbohydrate Esterase gene family AT5G53370 27.879 4.71e-10 60.8
Mimi17g02889 WGDA 77 247 Carbohydrate Esterase gene family AT5G53370 25.405 2.44e-09 57.4
Mimi17g02892 WGDA 79 226 Carbohydrate Esterase gene family AT5G53370 29.878 2.78e-10 59.7
Mimi17g02895 WGDA 79 225 Carbohydrate Esterase gene family AT5G53370 28.916 2.53e-10 58.5
Mimi17g02897 . 10 511 Carbohydrate Esterase gene family AT2G45220 60.853 0.0 638.0
Mimi16g00151 . 13 427 Carbohydrate Esterase gene family AT3G09410 60.0 0.0 538.0
Mimi16g00928 . 29 118 Carbohydrate Esterase gene family AT3G16970 28.421 2.60e-08 48.1
Mimi16g01396 . 69 729 Carbohydrate Esterase gene family AT5G36210 72.03 0.0 1018.0
Mimi16g02096 . 4 571 Carbohydrate Esterase gene family AT4G02330 60.457 0.0 697.0
Mimi15g00233 . 385 716 Carbohydrate Esterase gene family AT5G36210 25.0 2.39e-16 81.6
Mimi15g00495 . 5 561 Carbohydrate Esterase gene family AT3G10710 54.69 0.0 630.0
Mimi15g00498 . 5 561 Carbohydrate Esterase gene family AT3G10710 55.221 0.0 637.0
Mimi15g01051 . 41 419 Carbohydrate Esterase gene family AT3G02410 71.768 0.0 582.0
Mimi15g01297 ACH 52 213 Carbohydrate Esterase gene family AT3G14310 29.762 2.78e-16 74.7
Mimi15g01615 . 29 566 Carbohydrate Esterase gene family AT3G05610 46.111 0.0 527.0
Mimi15g01653 . 229 549 Carbohydrate Esterase gene family AT1G23200 53.012 7.81e-115 375.0
Mimi14g00005 . 4 321 Carbohydrate Esterase gene family AT3G48690 41.975 7.55e-81 246.0
Mimi14g00159 ACH 53 220 Carbohydrate Esterase gene family AT1G53830 29.944 7.42e-15 70.9
Mimi14g00391 WGDA 51 218 Carbohydrate Esterase gene family AT1G53830 31.548 2.89e-19 82.8
Mimi14g00392 ACH 53 213 Carbohydrate Esterase gene family AT3G14310 26.38 1.81e-16 74.7
Mimi14g00393 . 62 216 Carbohydrate Esterase gene family AT1G53830 28.662 5.26e-16 73.9
Mimi14g00604 . 7 389 Carbohydrate Esterase gene family AT4G19420 61.097 1.11e-178 531.0
Mimi14g00605 ACH,WGDA 17 379 Carbohydrate Esterase gene family AT4G19420 63.736 0.0 525.0
Mimi14g00667 . 3 375 Carbohydrate Esterase gene family AT4G19420 54.255 6.21e-156 443.0
Mimi14g01833 . 2 321 Carbohydrate Esterase gene family AT3G48690 43.21 2.56e-82 250.0
Mimi13g00810 . 231 566 Carbohydrate Esterase gene family AT3G05610 55.357 4.06e-136 414.0
Mimi13g00861 . 12 362 Carbohydrate Esterase gene family AT5G47500 72.365 0.0 531.0
Mimi13g00884 . 51 362 Carbohydrate Esterase gene family AT5G47500 78.526 0.0 529.0
Mimi13g00963 . 35 320 Carbohydrate Esterase gene family AT5G16080 40.268 9.67e-67 213.0
Mimi13g01462 . 3 247 Carbohydrate Esterase gene family AT1G53840 35.743 1.09e-40 145.0
Mimi12g00184 . 29 324 Carbohydrate Esterase gene family AT5G16080 35.048 3.40e-53 176.0
Mimi12g00249 . 32 359 Carbohydrate Esterase gene family AT5G61570 49.695 1.68e-103 306.0
Mimi12g00313 . 29 327 Carbohydrate Esterase gene family AT5G16080 35.331 6.54e-49 165.0
Mimi12g00588 . 52 560 Carbohydrate Esterase gene family AT5G49180 36.282 7.70e-108 333.0
Mimi12g00955 . 54 592 Carbohydrate Esterase gene family AT3G14310 60.853 0.0 639.0
Mimi12g00969 . 54 592 Carbohydrate Esterase gene family AT3G14310 60.556 0.0 640.0
Mimi11g00106 . 59 362 Carbohydrate Esterase gene family AT5G47500 39.048 5.64e-73 227.0
Mimi11g01148 . 66 341 Carbohydrate Esterase gene family AT1G05310 72.826 2.72e-157 453.0
Mimi11g01564 . 55 142 Carbohydrate Esterase gene family AT1G53830 43.82 2.08e-14 65.9
Mimi11g01565 . 52 592 Carbohydrate Esterase gene family AT3G14310 67.523 0.0 719.0
Mimi11g01567 . 52 591 Carbohydrate Esterase gene family AT3G14310 66.667 0.0 706.0
Mimi10g01096 . 28 341 Carbohydrate Esterase gene family AT5G16080 33.333 9.32e-61 196.0
Mimi10g01392 . 72 223 Carbohydrate Esterase gene family AT5G53370 31.25 2.15e-18 80.9
Mimi9g00184 . 92 606 Carbohydrate Esterase gene family AT4G33230 39.421 2.42e-126 382.0
Mimi9g00255 WGDA 75 224 Carbohydrate Esterase gene family AT5G53370 29.63 7.37e-13 64.7
Mimi9g00256 ACH,WGDA 56 220 Carbohydrate Esterase gene family AT1G53830 23.699 1.61e-07 48.9
Mimi9g00257 WGDA 79 225 Carbohydrate Esterase gene family AT5G53370 27.439 7.93e-09 53.1
Mimi9g00260 . 24 511 Carbohydrate Esterase gene family AT2G45220 68.675 0.0 702.0
Mimi9g00567 ACH 3 375 Carbohydrate Esterase gene family AT4G19420 49.211 1.46e-145 417.0
Mimi9g00700 ACH,WGDA 58 212 Carbohydrate Esterase gene family AT3G05610 28.025 4.67e-16 73.6
Mimi9g01189 . 36 543 Carbohydrate Esterase gene family AT3G05620 65.175 0.0 691.0
Mimi9g01268 . 27 380 Carbohydrate Esterase gene family AT5G55590 61.173 4.11e-151 429.0
Mimi9g01600 . 1 321 Carbohydrate Esterase gene family AT3G48690 47.531 1.20e-91 274.0
Mimi8g00700 . 27 362 Carbohydrate Esterase gene family AT5G47500 72.917 0.0 520.0
Mimi8g01159 . 28 334 Carbohydrate Esterase gene family AT5G16080 31.034 2.16e-51 172.0
Mimi8g01477 . 17 140 Carbohydrate Esterase gene family AT1G25141 25.984 2.38e-06 45.4
Mimi8g01506 . 39 332 Carbohydrate Esterase gene family AT2G19150 44.108 3.79e-85 259.0
Mimi7g00846 . 91 388 Carbohydrate Esterase gene family AT1G05310 58.054 4.30e-121 365.0
Mimi6g00376 . 37 546 Carbohydrate Esterase gene family AT5G09760 64.314 0.0 676.0
Mimi6g00689 . 1 342 Carbohydrate Esterase gene family AT5G16080 50.0 7.42e-109 319.0
Mimi6g00708 . 1 342 Carbohydrate Esterase gene family AT5G16080 50.0 7.42e-109 319.0
Mimi6g01019 . 306 585 Carbohydrate Esterase gene family AT5G53370 78.648 8.80e-172 486.0
Mimi6g01020 WGDA 1 310 Carbohydrate Esterase gene family AT5G53370 48.171 1.16e-89 277.0
Mimi6g01045 . 14 404 Carbohydrate Esterase gene family AT5G23870 62.087 0.0 528.0
Mimi6g01064 . 14 404 Carbohydrate Esterase gene family AT5G23870 57.252 5.61e-166 469.0
Mimi6g01108 . 8 488 Carbohydrate Esterase gene family AT2G45220 62.653 0.0 643.0
Mimi6g01111 . 122 213 Carbohydrate Esterase gene family AT1G53830 31.522 1.59e-11 57.4
Mimi6g01114 WGDA 59 217 Carbohydrate Esterase gene family AT3G14310 26.415 1.12e-17 79.0
Mimi6g01115 WGDA 58 210 Carbohydrate Esterase gene family AT3G05610 31.646 3.52e-18 80.1
Mimi6g01116 . 37 536 Carbohydrate Esterase gene family AT5G51490 53.557 0.0 562.0
Mimi6g01152 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.269 1.78e-114 335.0
Mimi6g01293 . 1 300 Carbohydrate Esterase gene family AT5G61570 51.333 9.43e-94 280.0
Mimi5g00367 . 31 338 Carbohydrate Esterase gene family AT5G16080 35.077 3.38e-54 179.0
Mimi5g00549 . 4 328 Carbohydrate Esterase gene family AT3G48700 46.483 7.49e-101 299.0
Mimi5g01540 . 33 343 Carbohydrate Esterase gene family AT3G63010 74.286 1.50e-174 486.0
Mimi5g01570 . 73 238 Carbohydrate Esterase gene family AT1G53840 28.743 3.61e-14 72.4
Mimi5g01576 . 10 525 Carbohydrate Esterase gene family AT4G02330 56.405 0.0 585.0
Mimi5g01577 . 31 195 Carbohydrate Esterase gene family AT3G10720 64.848 1.66e-78 233.0
Mimi4g00182 . 56 491 Carbohydrate Esterase gene family AT2G45220 68.09 0.0 625.0
Mimi4g00185 . 71 511 Carbohydrate Esterase gene family AT2G45220 64.062 0.0 588.0
Mimi4g00242 . 35 302 Carbohydrate Esterase gene family AT1G68620 32.384 1.12e-43 151.0
Mimi4g00491 WGDA 51 218 Carbohydrate Esterase gene family AT1G53830 28.824 5.94e-19 81.6
Mimi4g00748 WGDA 1 389 Carbohydrate Esterase gene family AT4G19420 62.051 0.0 536.0
Mimi4g01264 . 1 321 Carbohydrate Esterase gene family AT3G48690 42.724 4.94e-77 236.0
Mimi4g01290 . 4 321 Carbohydrate Esterase gene family AT3G48690 42.767 2.47e-77 237.0
Mimi4g01466 . 4 381 Carbohydrate Esterase gene family AT5G26670 66.58 0.0 528.0
Mimi3g00379 . 1 563 Carbohydrate Esterase gene family AT1G53840 59.187 0.0 670.0
Mimi3g00382 . 54 592 Carbohydrate Esterase gene family AT3G14310 63.956 0.0 712.0
Mimi3g00463 . 54 592 Carbohydrate Esterase gene family AT3G14310 63.956 0.0 710.0
Mimi3g00464 . 1 454 Carbohydrate Esterase gene family AT1G53840 57.269 2.87e-178 512.0
Mimi3g00777 . 8 358 Carbohydrate Esterase gene family AT5G47500 42.133 6.69e-102 309.0
Mimi3g00798 . 8 303 Carbohydrate Esterase gene family AT5G47500 42.32 5.66e-86 266.0
Mimi3g00880 . 44 592 Carbohydrate Esterase gene family AT3G14310 40.072 3.96e-133 399.0
Mimi3g00884 . 31 547 Carbohydrate Esterase gene family AT2G26440 61.464 0.0 645.0
Mimi3g00886 . 319 547 Carbohydrate Esterase gene family AT2G26440 72.926 1.82e-121 364.0
Mimi3g00887 . 32 523 Carbohydrate Esterase gene family AT4G33220 62.327 0.0 646.0
Mimi3g00918 ACH 8 269 Carbohydrate Esterase gene family AT3G48690 43.511 2.74e-65 204.0
Mimi3g01443 . 60 357 Carbohydrate Esterase gene family AT5G47500 34.769 1.78e-65 209.0
Mimi3g01954 . 44 323 Carbohydrate Esterase gene family AT5G16080 36.246 6.97e-52 172.0
Mimi3g01955 . 31 323 Carbohydrate Esterase gene family AT5G16080 35.599 2.47e-48 163.0
Mimi2g00184 ACH 57 229 Carbohydrate Esterase gene family AT5G53370 29.016 1.94e-16 75.9
Mimi2g00254 . 9 330 Carbohydrate Esterase gene family AT1G68620 52.41 7.96e-116 336.0
Mimi2g01154 . 69 561 Carbohydrate Esterase gene family AT3G10710 57.229 0.0 593.0
Mimi2g01155 . 5 561 Carbohydrate Esterase gene family AT3G10710 52.12 0.0 587.0
Mimi2g01184 . 5 561 Carbohydrate Esterase gene family AT3G10710 55.556 0.0 638.0
Mimi2g01185 . 5 561 Carbohydrate Esterase gene family AT3G10710 53.004 0.0 596.0
Mimi1g01511 . 35 551 Carbohydrate Esterase gene family AT5G09760 64.093 0.0 680.0
Mimi1g01552 . 24 341 Carbohydrate Esterase gene family AT3G05120 76.994 0.0 513.0
Mimi1g01931 . 26 196 Carbohydrate Esterase gene family AT1G24793 53.216 5.94e-63 195.0
Mimi1g01933 . 26 324 Carbohydrate Esterase gene family AT1G24793 54.849 1.77e-119 345.0
Mimi1g03461 . 40 359 Carbohydrate Esterase gene family AT5G61570 51.343 1.87e-106 314.0
Mimi1g03491 . 45 359 Carbohydrate Esterase gene family AT5G61570 35.294 2.41e-48 163.0
Mimi1g03519 ACH,WGDA 55 222 Carbohydrate Esterase gene family AT1G53830 28.571 1.45e-19 84.0
Mimi1g03520 WGDA 50 216 Carbohydrate Esterase gene family AT3G14310 24.551 7.15e-13 64.3
Mimi1g03521 . 53 216 Carbohydrate Esterase gene family AT3G14310 30.723 1.84e-21 89.4
Mimi1g03523 . 81 594 Carbohydrate Esterase gene family AT3G47400 40.267 1.05e-120 365.0
Mimi1g03635 WGDA 38 370 Carbohydrate Esterase gene family AT3G49220 55.394 1.20e-125 372.0
Mimi1g03636 . 367 587 Carbohydrate Esterase gene family AT5G53370 81.448 1.78e-139 401.0