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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00155 ATGGCTGATCAAGTGTTGGAGGGTAGCCAACCAGTTGATCTCACTAAGCATCCATCTGGAATCATTCCTACTCTTCAGAATATTGTGTCTACTGTGAATCTTGATTGCAAGCTAGACCTTAAGGCGATTGCGCTACAAGCTCGTAATGCAGAATATAACCCAAAGCGTTTTGCTGCTGTAATCATGAGGATTAGAGAACCGAAAACAACTGCCTTAATATTTGCTTCTGGAAAAATGGTATGTACAGGAGCCAAGAGTGAACAGCAATCCAAACTGGCAGCACGCAAGTATGCAAGAATTATTCAGAAACTTGGATTCCCAGCCAAATTTAAGGATTTCAAGATTCAGAATATTGTTGGTTCATGTGATGTAAAATTTCCCATTAGACTTGAAGGCCTTGCTTATTCTCATGGTGCCTTTTCAATTCCACCCTTGACTGATTGCCCTAAATTCAGGCTGTGGACCTCAGTAACCATGGGACATGGGTGGCAGGATAGATGTGTTGGGTGGATGGTTAGGGGTCGAGATAGGTTTTGTTTGAAACAGGCCGTGAGGTCAGAGATGAGACTTATACTGCCTTTGAGAACATATATCCTGTCCTTACTGAATTCAGAAAGAATCAACAGTGGTAAGTCTTCATCATCCACCCATGAAATCAAGTATAGGTGGCAAGTGGTTGGGCGGATTCTTGAGATGGATGAAATGGTGGTGAAACTTGAAAGAGGGAAAGTTGAGTTTAGGGTTTAA 747 42.17 MADQVLEGSQPVDLTKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSIPPLTDCPKFRLWTSVTMGHGWQDRCVGWMVRGRDRFCLKQAVRSEMRLILPLRTYILSLLNSERINSGKSSSSTHEIKYRWQVVGRILEMDEMVVKLERGKVEFRV 248
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00155 248 PANTHER TATA-BOX BINDING PROTEIN 9 141 IPR000814 GO:0003677(InterPro)|GO:0006352(PANTHER)|GO:0006352(InterPro)|GO:0016251(PANTHER)|GO:0140223(PANTHER)
Mimi17g00155 248 ProSitePatterns Transcription factor TFIID repeat signature. 52 101 IPR030491 -
Mimi17g00155 248 Gene3D - 112 147 IPR012295 -
Mimi17g00155 248 CDD TBP-eukaryotes 22 141 IPR033710 GO:0003677(InterPro)|GO:0006352(InterPro)
Mimi17g00155 248 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 112 137 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Mimi17g00155 248 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 104 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Mimi17g00155 248 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Mimi17g00155 248 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Mimi17g00155 248 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Mimi17g00155 248 PRINTS Transcription initiation factor TFIID signature 115 131 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Mimi17g00155 248 FunFam TATA-box-binding protein 2 30 115 - -
Mimi17g00155 248 SUPERFAMILY TATA-box binding protein-like 22 114 - -
Mimi17g00155 248 Gene3D - 30 111 IPR012295 -
Mimi17g00155 248 SUPERFAMILY TATA-box binding protein-like 107 136 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00155 K03120 transcription initiation factor TFIID TATA-box-binding protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:4318235 Mimi4g01300 Mimi-Chr4:28650163 dispersed
Mimi Mimi-Chr14:22972162 Mimi17g00155 Mimi-Chr17:4318235 wgd
Mimi Mimi-Chr17:4318235 Mimi17g00172 Mimi-Chr17:4706950 wgd