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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00182 ATGCATCTTCAACTTCCTCCTTCTCCGGCAATCTGCTCCTACTCCGACCAGCGTCCTCCGCCGCACAGCCACCTCCATTTCCGACCATCTCACCGGAAAAGCCTCCAGTACCTCAAATCACTCGGTATCATCCAACCGGAATTCACAACCACCCCATCACCTGCAACAGTCTCTCACATCCTCTCAACCATAGACTTCTTCAAATCAAAGGGCTTTTCCGAGCCTGATTTCCCGAGAATCGCGTACCTGTCTCCGCGTCTCTTTACGCCATCCTTCGAGCACAAAACCATGAAATCCGTATTCGAGTTCTTGGCGGATGATGTGGCCGCCTCACCGGAGGAATCCCGTGGGTTGATCCTCAAATGCCCTCACATCCTCGAATCGGACGTCGAATTATGCTTAAAACCGACACTCGGGTACCTAAAAAGCTTGGGGATTACGCGGTTGAACACTCCGACTGCTTTGAACGCGCATTTGCTCGATACGAGAGTGCGTAAATTCGAAGAAAAAATGCAGTTTTTACGGGACGTCGGGTTTTCGATCGAGGAATCGAAACGGGTTTGCGCGCGGTTTCGCGCTATATTCGGATATGGAACCGAGAATAACTTGAGGCCCAAGTATTTGTATCTGGTGAGAGATATGAAGAGGGATGGTAGGGATGAAGTGATGAGGTTTCCACAGTATTTTGGGTTTAGTTTGGAGAAGAGAATAAAATTTAGACATTTGCATTTGAAACATAGGAATGTTGATGGTGATGTGCCATTGAATAGAATGTTGTTGTGGGATGATCATAAATTTTTTAAAAAATGGAAATGA 816 46.94 MHLQLPPSPAICSYSDQRPPPHSHLHFRPSHRKSLQYLKSLGIIQPEFTTTPSPATVSHILSTIDFFKSKGFSEPDFPRIAYLSPRLFTPSFEHKTMKSVFEFLADDVAASPEESRGLILKCPHILESDVELCLKPTLGYLKSLGITRLNTPTALNAHLLDTRVRKFEEKMQFLRDVGFSIEESKRVCARFRAIFGYGTENNLRPKYLYLVRDMKRDGRDEVMRFPQYFGFSLEKRIKFRHLHLKHRNVDGDVPLNRMLLWDDHKFFKKWK 271
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00182 271 PANTHER CGI-12 PROTEIN-RELATED 58 269 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mimi17g00182 271 MobiDBLite consensus disorder prediction 1 25 - -
Mimi17g00182 271 Gene3D Transcription termination factor 3, mitochondrial 21 271 IPR038538 -
Mimi17g00182 271 Pfam mTERF 59 148 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mimi17g00182 271 Pfam mTERF 117 266 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mimi17g00182 271 SMART mt-12 185 217 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mimi17g00182 271 SMART mt-12 219 250 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mimi17g00182 271 SMART mt-12 116 147 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mimi17g00182 271 SMART mt-12 152 180 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mimi17g00182 271 SMART mt-12 78 111 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00182 K15031 mitochondrial transcription termination factor family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:5046362 Mimi1g01950 Mimi-Chr1:91411702 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi mTERF 5.5e-27 No_clan TR mTERF