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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00192 ATGCTTTCTAGTTTCATACCATTTAGAGGCATGAAATCAAAAATTGTTCCTTACTATATGAACGGTAATCCGTCAAGTCTTTTTTGCATATTGCCTAGAGATGATTCTTCACGGTTTTACCCTCCCGGAACCGCCCCTGTTTACCTTAACGTGTATGACATTTCTACCATCAACACTTGTATATCTTGGACCGGCATTGGTGCATTTCACACTGGTTTGGAAGTTCATGGTGTGGAATATGGTTTTGGATGTCATCAAGAATCAGAAAGTGGTGTTTTTGAAATTGAACCTCGAAAATGCCCCGGGTTCAAGTTTAGGGAGTCGATTTTAATGGGCACCACAAAACTAACCCCAAACCAAGTTCAAAGATTCATTGAGCTTCAATCTAATAACTACTATGGTGATACATACCATTTATTTGGGAAGAATTGCAATCATTTTTGTGATGATATATGTTACAAGTTAACAGGGAACAGAATTCCCAAATGGGTCAACCGACTAGCCCGAATAGGTTCATGTTGTCATTGCATTCTCCCGAAGGCGATCAAGGGTTCTGCTGTTAAGAATGCATCAAACTCTCAAGACGAAGAAAAGAGGAGTTTAAGAAGCTCGTTTAGCTGTTTCAACTCATTCTCGACGCATAACAAACTGAAGAAAGTATCGATAACATCGTTGTATAAACACTCACTCTACAAAGGATGTCTACCCCCATGGGAACTGCAAATGGCGAAACAGACACCACCGATGGAATCCTCGCGACGAGAGGAGAAAGATGGTGTAGAGATTGGTGGATGGCGCCGCCGTGGTTCGCCGGAAACAAACCGGCAAGGTGGTGGTGGTGTTTCTCTCTCTTGA 855 42.22 MLSSFIPFRGMKSKIVPYYMNGNPSSLFCILPRDDSSRFYPPGTAPVYLNVYDISTINTCISWTGIGAFHTGLEVHGVEYGFGCHQESESGVFEIEPRKCPGFKFRESILMGTTKLTPNQVQRFIELQSNNYYGDTYHLFGKNCNHFCDDICYKLTGNRIPKWVNRLARIGSCCHCILPKAIKGSAVKNASNSQDEEKRSLRSSFSCFNSFSTHNKLKKVSITSLYKHSLYKGCLPPWELQMAKQTPPMESSRREEKDGVEIGGWRRRGSPETNRQGGGGVSLS 284
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00192 284 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Mimi17g00192 284 MobiDBLite consensus disorder prediction 249 265 - -
Mimi17g00192 284 PANTHER DESUMOYLATING ISOPEPTIDASE 44 207 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Mimi17g00192 284 Gene3D PPPDE domains 41 199 IPR042266 -
Mimi17g00192 284 MobiDBLite consensus disorder prediction 243 284 - -
Mimi17g00192 284 Pfam PPPDE putative peptidase domain 46 180 IPR008580 GO:0008233(InterPro)
Mimi17g00192 284 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00192 K22763 deubiquitinase DESI2 [EC:3.4.19.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:5275324 Mimi5g00575 Mimi-Chr5:50650035 dispersed
Mimi Mimi-Chr18:23502455 Mimi17g00192 Mimi-Chr17:5275324 transposed
Mimi Mimi-Chr1:118249952 Mimi17g00192 Mimi-Chr17:5275324 transposed
Mimi Mimi-Chr3:3152247 Mimi17g00192 Mimi-Chr17:5275324 transposed
Mimi Mimi-Chr3:32969846 Mimi17g00192 Mimi-Chr17:5275324 transposed
Mimi Mimi-Chr8:54126250 Mimi17g00192 Mimi-Chr17:5275324 transposed
Mimi Mimi-Chr8:58657265 Mimi17g00192 Mimi-Chr17:5275324 transposed
Mimi Mimi-Chr11:31204048 Mimi17g00192 Mimi-Chr17:5275324 wgd