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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00209 ATGGGTACTCTATTCAAAGCAAGCTTGATCTTGTTGTTCATTTGGTTTCTTCTCGCACCTGCTGTGTATTCGGGTCCTAATGGTGGGTTAGTTCGAGTTGGACTTAAGAAGAGGAAAATCAATCAATTGACTCAGATTGGACGTGCTGGATCTAATGAAGGAAATGCGAGAAGAAATTACGGTTTTCGTGGTAATTACAGGCTTTCAGATGGTGATGCTATTGCTCTAAACAATTACATGGATGCTCAGTATTATGGGGAGATTGGTATTGGTACTCCACCTCAAAAGTTCACTGTGATTTTTGACACTGGTAGTTCTAATCTGTGGGTGCCTTCTGCAAAGTGCCACTTCTCAGTAGCTTGCCTTGTTCACTCAAAGTTTAAGTCTAGCGAGTCAAGTTCCTATAAGAAAAATGGGAAATCTGCAGCAATTCAATATGGAACTGGCTCTATCTCTGGTTTTTTTAGCCAAGATTATATCAAACTTGGTGATCTTATTGTGAAAGAGCAAGATTTTATCGAGGCAACTAAAGAGCCTGGTGTCACTTTCTTAGCGGCCAAGTTTGATGGCATACTAGGCCTTGGGTTTCAAGAAATCTCTGTTGGGGATGCTGTTCCTGTCTGGTACAACATGTTGAAACAAGAACTTGTGCAAGAATCTGTATTTTCATTTTGGCTTAATCGCCATGCTGATGAGGACGAAGGGGGAGAACTTGTGTTTGGTGGGATTGACCATAAGCATTTCAAGGGTAAACACACATATGTTCCTGTAACACAGAAAGGTTATTGGCAGGTAAATCCAATTTCTATTGCAGGATTTTGCTCTGGTGGTTGTGCAGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGTCCAACGGCTATTGTTACTCAAATAAATCAAGCCATTGGTGCTGCTGGTGTTATGAGCCAACAATGCAAGACATTGGTCAATCAGTATGGGAAAACTATACTTGAGATGCTACTATACGAGACAAAACCAGATAAAATTTGCTCTCAAATGAGATTATGCTCCTCTGATGGCTCTCATGATACCAGCATGATAATTGAGAGTGTCGTCGACCAGAATGATGGAAAATCATCTGGTGTACATGATGAGATGTGTAGTCTCTGCGAAATGGCTGTTGTTTGGATGGAAACCAAAATGGTGCGAAATGAAACTGAAGATGAAATAATTGACCATGTTCATCAGCTGTGTGAGAGGTTGCCTAATCCAATGGGAGAATCTAGAGTCGAGTGCGACAGTCTTTCATCCATGCCGAATATTGCTTTTACCATTGGTGGTAGAACATTTGAACTCTCTCCTGAAGAGTATATCCTGAAAATTGGTGAGGGGGCAGCAACACAATGCATCAGTGGATTTACAGCTATTGACATTCCACCTCCTCGTGGGCCCCTTTGGATCCTGGGAGATATTTTTATGGGTAAATATCATACCGTGTTTGACTACGGTAAATCTCGAGTTGGGTTTGCTGAAGCTGTTTGA 1506 41.63 MGTLFKASLILLFIWFLLAPAVYSGPNGGLVRVGLKKRKINQLTQIGRAGSNEGNARRNYGFRGNYRLSDGDAIALNNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSAKCHFSVACLVHSKFKSSESSSYKKNGKSAAIQYGTGSISGFFSQDYIKLGDLIVKEQDFIEATKEPGVTFLAAKFDGILGLGFQEISVGDAVPVWYNMLKQELVQESVFSFWLNRHADEDEGGELVFGGIDHKHFKGKHTYVPVTQKGYWQVNPISIAGFCSGGCAAIADSGTSLLAGPTAIVTQINQAIGAAGVMSQQCKTLVNQYGKTILEMLLYETKPDKICSQMRLCSSDGSHDTSMIIESVVDQNDGKSSGVHDEMCSLCEMAVVWMETKMVRNETEDEIIDHVHQLCERLPNPMGESRVECDSLSSMPNIAFTIGGRTFELSPEEYILKIGEGAATQCISGFTAIDIPPPRGPLWILGDIFMGKYHTVFDYGKSRVGFAEAV 501
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00209 501 ProSiteProfiles Saposin B type domain profile. 308 348 IPR008139 -
Mimi17g00209 501 Pfam Saposin-like type B, region 2 311 344 IPR008138 -
Mimi17g00209 501 Gene3D Acid Proteases 243 500 IPR021109 -
Mimi17g00209 501 FunFam Vacuolar aspartic proteinase 366 500 - -
Mimi17g00209 501 Gene3D Acid Proteases 31 242 IPR021109 -
Mimi17g00209 501 ProSiteProfiles Saposin B type domain profile. 371 412 IPR008139 -
Mimi17g00209 501 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 11 500 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Mimi17g00209 501 FunFam Lysosomal aspartic protease 71 306 - -
Mimi17g00209 501 SUPERFAMILY Saposin 309 410 IPR011001 -
Mimi17g00209 501 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 280 291 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Mimi17g00209 501 Pfam Saposin-like type B, region 1 374 410 IPR007856 GO:0006629(InterPro)
Mimi17g00209 501 ProSiteProfiles Peptidase family A1 domain profile. 84 498 IPR033121 -
Mimi17g00209 501 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Mimi17g00209 501 SUPERFAMILY Acid proteases 30 500 IPR021109 -
Mimi17g00209 501 Gene3D - 308 410 - -
Mimi17g00209 501 PRINTS Pepsin (A1) aspartic protease family signature 474 489 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mimi17g00209 501 PRINTS Pepsin (A1) aspartic protease family signature 280 291 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mimi17g00209 501 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mimi17g00209 501 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mimi17g00209 501 Pfam Eukaryotic aspartyl protease 83 500 IPR033121 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00209 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
129230 Mimi14g01143 Mimi17g00209
421440 Mimi17g00209 Mimi9g01531
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr14:22383786 Mimi17g00209 Mimi-Chr17:5591172 dispersed
Mimi Mimi-Chr17:5591172 Mimi4g01307 Mimi-Chr4:28827672 dispersed
Mimi Mimi-Chr17:5591172 Mimi9g01531 Mimi-Chr9:55481308 wgd