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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00229 ATGAAAGTGAATCAAGAACTCGACCAATCGGAACGTGACAACTGTCGAACCATCGGAGTCGTTCTACCGGTATCCAAGCCATCAACTCCGGCGACTGATAATTTCGATTCGAACGGCGATGAGCTATACACGCCGCCGCTCAATTTCTCGATGGTTGATAATGGCATATTCCGGTCCGGATTCCCTGATACCGCTAATTTCTCGTATCTCAAAACCCTAGGCCTGCGCTCTATCGTGTATTTGTGCCCTGAACCGTATCCTGAGCATAACATGGAGTTTTTGAAGGCTAATCGGATTCATTTGTTTCAGTTTGGAATTGAAGGAACTAAGGAACCTTTTGTCAATATCCCCGAAAACATAATTCGAGAAGCATTAAAAGTTGTTCTTGATGTAAGAAATCACCCATTGCTAATTCATTGCAAAAGAGGCAAGCATCGAACGGGTTGTCTGGTGGGATGTTTGAGAAAAATACAAAGATGGTGTTTAACATCGATTTTTGATGAATACCAAAGATTTGCAGCTGCAAAAGCTAGACTTTCAGATCAAAGGTTTATGGAGCTTTTTGATGCATCTGGATTCAAAGATATACCACCATGTCCATGTTCCTGTTCTAGGAGTCGACGACCTCGTGGAGGTGGAGGTGGAGGTGGCTGTAACGGCGCCCTGCCGGTGCGGCACGCACGTCACCCTGCTGAGGTTGCTGCTGAGGAACTCAAGGAACGCCTCGCTTTAAACAGAAACGAAAGCCAACTCCTCGGATGTCAGCAGCAATACGCATAG 780 45.9 MKVNQELDQSERDNCRTIGVVLPVSKPSTPATDNFDSNGDELYTPPLNFSMVDNGIFRSGFPDTANFSYLKTLGLRSIVYLCPEPYPEHNMEFLKANRIHLFQFGIEGTKEPFVNIPENIIREALKVVLDVRNHPLLIHCKRGKHRTGCLVGCLRKIQRWCLTSIFDEYQRFAAAKARLSDQRFMELFDASGFKDIPPCPCSCSRSRRPRGGGGGGGCNGALPVRHARHPAEVAAEELKERLALNRNESQLLGCQQQYA 259
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00229 259 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 189 IPR029021 -
Mimi17g00229 259 PANTHER TYROSINE-PROTEIN PHOSPHATASE 34 198 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Mimi17g00229 259 CDD PFA-DSP-Siw14 42 189 - -
Mimi17g00229 259 Pfam Tyrosine phosphatase family 45 194 IPR004861 -
Mimi17g00229 259 ProSitePatterns Tyrosine specific protein phosphatases active site. 138 148 IPR016130 GO:0016311(InterPro)
Mimi17g00229 259 FunFam probable tyrosine-protein phosphatase At1g05000 42 192 - -
Mimi17g00229 259 PRINTS Plant and fungal dual specificity phosphatase signature 43 60 IPR020428 GO:0016791(InterPro)
Mimi17g00229 259 PRINTS Plant and fungal dual specificity phosphatase signature 99 113 IPR020428 GO:0016791(InterPro)
Mimi17g00229 259 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791(InterPro)
Mimi17g00229 259 PRINTS Plant and fungal dual specificity phosphatase signature 80 93 IPR020428 GO:0016791(InterPro)
Mimi17g00229 259 Gene3D Protein tyrosine phosphatase superfamily 43 192 IPR029021 -
Mimi17g00229 259 ProSiteProfiles Dual specificity protein phosphatase domain profile. 48 199 IPR020422 GO:0006470(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00229 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
421441 Mimi17g00229 Mimi9g01503
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr1:43438544 Mimi17g00229 Mimi-Chr17:6161854 transposed
Mimi Mimi-Chr1:44587254 Mimi17g00229 Mimi-Chr17:6161854 transposed
Mimi Mimi-Chr17:6161854 Mimi9g01503 Mimi-Chr9:53670582 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi19g01381 . 21 187 Protein tyrosine phosphatase (PTP) family AT3G23610 62.874 2.39e-71 216.0
Mimi19g01700 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 59.559 9.02e-107 308.0
Mimi18g00820 . 10 490 Protein tyrosine phosphatase (PTP) family AT3G10550 59.649 0.0 562.0
Mimi18g00855 ACH 473 840 Protein tyrosine phosphatase (PTP) family AT3G10550 50.498 3.56e-120 367.0
Mimi18g01175 ACH 1 347 Protein tyrosine phosphatase (PTP) family AT3G55270 68.579 2.87e-170 507.0
Mimi17g00229 WGDA 1 213 Protein tyrosine phosphatase (PTP) family AT1G05000 67.757 1.06e-98 286.0
Mimi17g01366 . 1 647 Protein tyrosine phosphatase (PTP) family AT5G01290 62.261 0.0 826.0
Mimi17g01409 . 1 647 Protein tyrosine phosphatase (PTP) family AT5G01290 62.261 0.0 826.0
Mimi17g02132 . 18 315 Protein tyrosine phosphatase (PTP) family AT2G35680 51.827 1.37e-102 301.0
Mimi16g00175 . 2 335 Protein tyrosine phosphatase (PTP) family AT1G71860 62.537 3.14e-148 420.0
Mimi15g00978 . 58 611 Protein tyrosine phosphatase (PTP) family AT3G19420 60.854 0.0 694.0
Mimi14g01314 . 28 529 Protein tyrosine phosphatase (PTP) family AT3G19420 72.781 0.0 773.0
Mimi14g01375 . 28 515 Protein tyrosine phosphatase (PTP) family AT3G19420 74.239 0.0 772.0
Mimi14g02290 . 34 226 Protein tyrosine phosphatase (PTP) family AT5G56610 66.162 5.80e-91 268.0
Mimi14g02412 . 36 327 Protein tyrosine phosphatase (PTP) family AT2G35680 47.039 5.40e-88 264.0
Mimi13g00057 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 2.97e-07 50.4
Mimi13g00934 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 57.292 5.70e-124 357.0
Mimi12g00144 . 7 80 Protein tyrosine phosphatase (PTP) family AT3G02800 67.568 3.69e-31 108.0
Mimi12g00154 . 7 80 Protein tyrosine phosphatase (PTP) family AT3G02800 67.568 2.07e-30 107.0
Mimi12g02251 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 56.743 5.48e-150 429.0
Mimi11g01272 . 14 912 Protein tyrosine phosphatase (PTP) family AT5G23720 62.258 0.0 1113.0
Mimi10g00566 WGDA 458 534 Protein tyrosine phosphatase (PTP) family AT3G01510 33.766 3.31e-06 46.2
Mimi9g00016 . 1 329 Protein tyrosine phosphatase (PTP) family AT2G35680 54.03 7.32e-114 332.0
Mimi9g01503 WGDA 47 207 Protein tyrosine phosphatase (PTP) family AT1G05000 76.398 9.20e-92 264.0
Mimi9g01625 . 28 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.758 0.0 792.0
Mimi7g00892 . 29 187 Protein tyrosine phosphatase (PTP) family AT3G23610 64.78 8.94e-71 211.0
Mimi7g01100 . 63 239 Protein tyrosine phosphatase (PTP) family AT3G44620 72.316 6.24e-93 268.0
Mimi6g01814 ACH 1 332 Protein tyrosine phosphatase (PTP) family AT3G55270 69.706 4.72e-160 476.0
Mimi5g01523 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 54.328 0.0 686.0
Mimi4g00862 WGDA 265 326 Protein tyrosine phosphatase (PTP) family AT3G52180 40.625 1.44e-07 51.6
Mimi4g01903 . 35 315 Protein tyrosine phosphatase (PTP) family AT2G35680 54.804 2.07e-100 295.0
Mimi4g02011 . 35 315 Protein tyrosine phosphatase (PTP) family AT2G35680 54.804 2.07e-100 295.0
Mimi3g00050 . 114 257 Protein tyrosine phosphatase (PTP) family AT2G04550 43.293 8.60e-35 120.0
Mimi1g00463 . 17 196 Protein tyrosine phosphatase (PTP) family AT3G02800 63.889 1.09e-83 245.0
Mimi1g00489 . 17 196 Protein tyrosine phosphatase (PTP) family AT3G02800 63.889 1.09e-83 245.0
Mimi1g01767 . 44 396 Protein tyrosine phosphatase (PTP) family AT5G39400 54.802 2.44e-135 389.0
Mimi1g02674 . 62 576 Protein tyrosine phosphatase (PTP) family AT3G01510 72.727 0.0 767.0
Mimi1g03101 ACH 8 840 Protein tyrosine phosphatase (PTP) family AT3G10550 59.29 0.0 984.0
Mimi1g03108 . 67 372 Protein tyrosine phosphatase (PTP) family AT3G52180 65.584 7.07e-144 425.0
Mimi1g03426 . 28 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.144 6.02e-144 404.0