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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00280 ATGTGTAGGCTGCAAGGGGGCTGCATAGGACTGGCACGTGGTGGTACCTGGTGGCATTGTGTCATGGATGGAACAAACGAATGGGTCAGGGGGGCCTTGGCTAGGGCTACCAAAAAGTGGCAAGGCCAGCCTTGGCATGGCTTGCAACAGCACAAGCCACAAAGGGGCCTTACCCATGTACATATGCACACTGAAAGGCTGCACCAGGCCAGTGCACCAGGTCACTGCAGAGCTGCACCAGGCAACTGCAGGCCACCATCGAAGACACAACAAGGTTGGAGCAGGACACTGAAGGGCTGCACCAGGCCAAGTATCAAGAGAATTGGGAGTGAATCAACGGTTTATGAAACTGAAGACGAAGGTGAAGATGCAGAGGATCATGGAATTGAATTGGGTCCTCAATGCACCCTCAAAGAACAACTTGAGAAAGACAAGGATGATGAGAGCCTCAGAAAGTGGAAGGAACAGCTACTTGGAAACGTTGATATCAATGATGTTGGAGAATCACTTGAACCAGAAGTAAAAATCACGAGTCTTTCGATCTTGTCACCTGGGGTATCGGACATTGTTCTTGCAATACCAGAAGATGGTAAACCTAAAGGTTTATGGTTTACATTGAAAGAAGGTTGTCGTTACAGTTTGAGGTTCAAGTTTCAAGTCAGTCGTAACATTGTTGCTGGTTTAAAGTACACAAACAATGTATGGAGAACTGGCGTTAAAGTGGATAGAGTGAAACACATGCTTGGAACTTTTAGTCCCCAACAAGAAGCATACACTTATGACATGCCTGAAGAGACTACTCCTTCTGGTTACTTTGCAAGAGGATCTTACTCAGCTAAAACAAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATAAACTATTCCTTTGATATCCGGAAAGATTGGGCCAACATTCAACAAACAAAAGCATGA 939 45.47 MCRLQGGCIGLARGGTWWHCVMDGTNEWVRGALARATKKWQGQPWHGLQQHKPQRGLTHVHMHTERLHQASAPGHCRAAPGNCRPPSKTQQGWSRTLKGCTRPSIKRIGSESTVYETEDEGEDAEDHGIELGPQCTLKEQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKITSLSILSPGVSDIVLAIPEDGKPKGLWFTLKEGCRYSLRFKFQVSRNIVAGLKYTNNVWRTGVKVDRVKHMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYSFDIRKDWANIQQTKA 312
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00280 312 PRINTS RHO protein GDP dissociation inhibitor signature 241 256 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Mimi17g00280 312 PRINTS RHO protein GDP dissociation inhibitor signature 283 300 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Mimi17g00280 312 PRINTS RHO protein GDP dissociation inhibitor signature 224 240 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Mimi17g00280 312 FunFam Rho GDP-dissociation inhibitor 1 127 306 - -
Mimi17g00280 312 Pfam RHO protein GDP dissociation inhibitor 117 303 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Mimi17g00280 312 MobiDBLite consensus disorder prediction 73 96 - -
Mimi17g00280 312 SUPERFAMILY E set domains 111 305 IPR014756 -
Mimi17g00280 312 Gene3D Coagulation Factor XIII, subunit A, domain 1 126 306 IPR024792 -
Mimi17g00280 312 PANTHER RHO GDP-DISSOCIATION INHIBITOR 113 304 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00280 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
129225 Mimi14g01117 Mimi17g00280
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:8221180 Mimi4g01024 Mimi-Chr4:19354107 dispersed
Mimi Mimi-Chr17:80116721 Mimi17g00280 Mimi-Chr17:8221180 transposed
Mimi Mimi-Chr14:22030730 Mimi17g00280 Mimi-Chr17:8221180 wgd