AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00290 ATGGGTAAAATCTTGAGCCTGTTGCTTTGCTTTCTGATTTCGAATCTGGCCGTATCATCTGCTCAAACTTGCGGCAATTACGCCTTTTCGAGCAACGAAATCTACTCCACATGCGTATCGTTACCTGTTTTGGACTCGCATCTGCACTGGACTTACCATCCCTCCAACGGCTCCGTCGATCTGGCTTTCCGGCATACCGGATCGGCAACGTCACAGTGGGTTGCTTGGGCGCTCAACGTCGGTGGCCGTGGTATGGTCGGAGCGCAGGCTCTTGTTGCTGTAACCAGTTCAAACGGGTCGGTTCAAGCTTACACTTCAGCAGTCACCAGTTACGGAACCGGTTTGCAACCGAGCGATTTGAGCTTCAGTGTGCCGAGGATCAGGGCGGAGAGGGTTCAAGGCGTGGTGGTGATTTACGCGACGGTGGTGTTGCCTCCTGGTGGGACGAGTTTTAATCAAGTGTGGCAGGTGGGTCCGGTTACTAATGGAGCTCCGGCCATTCATGCCTTGGATCCCGCTAACCGGAATTCCGTCGGAGTTGTGGATTTTAGCACCGGTGAGACTACTGCCAGCGGCGCTGTTGGTGGGGCACGACTTCGCCGGAGAAACAGACATGGAGTATTGAACGCGGTTAGTTGGGGAGTTTTGATGCCTATGGGTGCTATGGCTGCAAGATACTTAAAGGTCTTTACTGTGGCTAACCCAGCTTGGTTTTACATCCATGTTGCTACCCAAACATCAGCCTATATCGTCGGTGTAGCCGGATGGGCCACCGGTCTCAAGCTCGGCAGTGACTCCACCGGAATTACATATGATACTCACCGGAACATCGGAATCATCCTGTTTTCTCTTGCAACACTTCAGGTTTTTGCTCTGCTGTTGAGGCCTAAACCAGACAACAAGTACAGATTCTACTGGAACATCTACCATCATTCTCTTGGATACTCTATCATCATCTTGAGCATCATCAACGTCTACGAAGGACTCGATATCTTGGACCCGGAGAAGAAATGGAAGAACGCGTACACCGGGATACTCATATCTCTGGGTGTTATTACAGTTATTTTGGAAGCTTTGACATGGTTCATTGTATTGAAGAGGAAGAAAGATGACAAGAGGACACATGCAGGAACCAATGGTGCTAATGGACATGCATAG 1158 50.26 MGKILSLLLCFLISNLAVSSAQTCGNYAFSSNEIYSTCVSLPVLDSHLHWTYHPSNGSVDLAFRHTGSATSQWVAWALNVGGRGMVGAQALVAVTSSNGSVQAYTSAVTSYGTGLQPSDLSFSVPRIRAERVQGVVVIYATVVLPPGGTSFNQVWQVGPVTNGAPAIHALDPANRNSVGVVDFSTGETTASGAVGGARLRRRNRHGVLNAVSWGVLMPMGAMAARYLKVFTVANPAWFYIHVATQTSAYIVGVAGWATGLKLGSDSTGITYDTHRNIGIILFSLATLQVFALLLRPKPDNKYRFYWNIYHHSLGYSIIILSIINVYEGLDILDPEKKWKNAYTGILISLGVITVILEALTWFIVLKRKKDDKRTHAGTNGANGHA 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00290 385 CDD Cyt-b561-FRRS1-like 176 358 - -
Mimi17g00290 385 Gene3D - 185 375 - -
Mimi17g00290 385 CDD DOMON-CIL1-like 35 185 IPR045265 -
Mimi17g00290 385 FunFam Cytochrome b561 and DOMON domain-containing protein 183 373 - -
Mimi17g00290 385 PIRSF UCP037471 1 385 IPR017214 -
Mimi17g00290 385 SMART 561-7 204 329 IPR006593 -
Mimi17g00290 385 ProSiteProfiles Cytochrome b561 domain profile. 164 365 IPR006593 -
Mimi17g00290 385 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 6 369 - -
Mimi17g00290 385 ProSiteProfiles DOMON domain profile. 44 158 IPR005018 -
Mimi17g00290 385 Pfam Eukaryotic cytochrome b561 205 329 IPR006593 -
Mimi17g00290 385 Pfam Protein of unknown function (DUF568) 85 183 IPR045265 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00290 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
129221 Mimi14g01110 Mimi17g00290
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:79605543 Mimi17g00290 Mimi-Chr17:8405924 dispersed
Mimi Mimi-Chr17:8405924 Mimi4g01184 Mimi-Chr4:23858295 dispersed
Mimi Mimi-Chr17:8365482 Mimi17g00290 Mimi-Chr17:8405924 tandem