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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00319 ATGGCGGATTCCGACAACGAATCGGGCGGTCAGAACGCCGGCGGAGAGATGTCGGCGAGAGAGCAGGACCGGTTCCTGCCGATTGCTAACGTGAGCCGGATCATGAAGAAGGCGTTGCCTGCGAACGCGAAAATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGTTTCATCACCGGGGAAGCGTCGGACAAGTGCCAGCGGGAGAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGTTAGGGTTTGAAGAGTACGTTGAGCCTCTGAAGATTTATCTGGCGAAGTACAGGGAAATTGAAGGGGAGAAGACAACTGTTGGAAGACACGGTGAGAAGGATGGATCATCGGGAGGCGGTGGTGCAGCCGGTGGTGGCGGAGGGAGTGGCGGCGGTGTGAGTTCCGGCGGGTATAGTGACGGTGCCGGAGGAATGTATGGGGGTATGCAGAATAGCATGATGATGGGTCGGCACCATCACCAGATGTACAATTCGGGTTCATTTCATCAAATGGGTTTGGGTTTAGGAAGCCCAACTGGCAGATCGGGCGGTGGTGGTGGTGCTCCCGCAACAAAACCCAGGTAG 618 56.8 MADSDNESGGQNAGGEMSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLAKYREIEGEKTTVGRHGEKDGSSGGGGAAGGGGGSGGGVSSGGYSDGAGGMYGGMQNSMMMGRHHHQMYNSGSFHQMGLGLGSPTGRSGGGGGAPATKPR 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00319 205 ProSitePatterns NF-YB-HAP3 subunit signature. 56 72 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi17g00319 205 MobiDBLite consensus disorder prediction 1 15 - -
Mimi17g00319 205 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Mimi17g00319 205 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Mimi17g00319 205 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Mimi17g00319 205 SUPERFAMILY Histone-fold 22 130 IPR009072 GO:0046982(InterPro)
Mimi17g00319 205 MobiDBLite consensus disorder prediction 116 142 - -
Mimi17g00319 205 MobiDBLite consensus disorder prediction 1 22 - -
Mimi17g00319 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 161 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Mimi17g00319 205 FunFam Nuclear transcription factor Y subunit B-3 14 134 - -
Mimi17g00319 205 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 25 89 IPR003958 -
Mimi17g00319 205 Gene3D Histone, subunit A 14 131 IPR009072 GO:0046982(InterPro)
Mimi17g00319 205 MobiDBLite consensus disorder prediction 176 205 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00319 K08065 nuclear transcription Y subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:9311175 Mimi3g00032 Mimi-Chr3:914881 dispersed
Mimi Mimi-Chr17:9311175 Mimi7g00885 Mimi-Chr7:50142684 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi17g00073 . 26 75 CCAAT-HAP3 Transcription Factor family AT3G53340 52.0 4.94e-07 43.5
Mimi17g00319 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 87.302 8.53e-79 231.0
Mimi17g02684 . 50 153 CCAAT-HAP3 Transcription Factor family AT5G47670 82.857 2.20e-62 190.0
Mimi14g01659 . 1 98 CCAAT-HAP3 Transcription Factor family AT1G09030 71.717 1.58e-50 155.0
Mimi14g01665 . 1 98 CCAAT-HAP3 Transcription Factor family AT1G09030 71.717 3.05e-51 157.0
Mimi13g00816 . 51 158 CCAAT-HAP3 Transcription Factor family AT2G47810 71.296 8.44e-56 170.0
Mimi12g00560 WGDA 18 149 CCAAT-HAP3 Transcription Factor family AT2G47810 64.394 7.60e-57 174.0
Mimi10g00561 . 35 201 CCAAT-HAP3 Transcription Factor family AT5G47670 64.205 2.13e-69 209.0
Mimi8g00212 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 86.614 5.73e-74 221.0
Mimi7g00885 ACH 1 172 CCAAT-HAP3 Transcription Factor family AT2G37060 72.626 6.08e-80 234.0
Mimi6g01594 . 1 169 CCAAT-HAP3 Transcription Factor family AT2G37060 69.149 1.42e-78 230.0
Mimi6g01612 ACH 21 168 CCAAT-HAP3 Transcription Factor family AT3G53340 75.839 2.46e-78 229.0
Mimi5g01558 WGDA 43 157 CCAAT-HAP3 Transcription Factor family AT2G47810 74.783 9.93e-61 184.0
Mimi3g00032 . 1 119 CCAAT-HAP3 Transcription Factor family AT4G14540 89.916 2.14e-76 224.0
Mimi3g01171 . 1 102 CCAAT-HAP3 Transcription Factor family AT1G09030 65.049 2.67e-46 145.0
Mimi1g00997 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 58.73 1.05e-63 194.0
Mimi1g01095 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 58.73 1.31e-63 194.0
Mimi1g01368 . 32 121 CCAAT-HAP3 Transcription Factor family AT5G47640 30.208 3.15e-11 57.4
Mimi1g01556 . 9 108 CCAAT-HAP3 Transcription Factor family AT4G14540 78.0 2.13e-52 163.0
Mimi1g03183 . 6 157 CCAAT-HAP3 Transcription Factor family AT2G37060 45.161 7.99e-46 148.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi CBFD_NFYB_HMF 2e-27 CL0012 TF NF-YB