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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00322 ATGAACATGGAAACTTCATCAAATGAGATTGTAAATGAAGTTGATATGCTTAATGCCTCTTATGATGCTTTTGAAGGAGTTATTATAAACATCGAAAACGACATGGATGAATATGTTTTTACCACTTTACTTCGAACATCGATATCTCAATGGAGACAGCAGGGAAAGAAGGGAGTGTGGCTTAAACTGTCTCTTGAACTTGTGAATCTTGTTAAGCCTGCAGTAAAGGAAGGATTTTGGTACCATCATGCGGAACCAACATATGTTATGCTTGTGTATTGGATTCCTGAAACTAGTCATACTCTCCCGCCGAATGCTTCACATCGAGTCGGTGTTGCTTCTTTTGTTGTAAACAACAAAGGAGAGGTTCTTGTGGTTCAAGAGAAGAGTGGATCATTTAAAGGAACAGGGGTCTGGAAATTACCAACCGGTACTGTTGAAGAGGGTGAAGATATAAGCCTAGCTGCCATCAGGGAAGTGAAAGAAGAGACTGGAATTGAAACAGAATTCATGGAAGTCCTTGCATTCAGGCAAAGTCACAAATCATTCTTTAGCAAGTCAGATCTAATGTTTGTTTGCATGTTAAAACCAACATCTTTGGATATCCAAAAACAAGATTCTGAGATTGAAGCAGCAGAGTGGATGCCAGTTGAAGAATATGCAAACCAGCCCTTTATAAAGAATCACAAATCTTTTGACTCAATTGCTAAAATATGTATAGCAAAAAAAGATGACAAATATGTTGGATTTTCACCATTGCTTACAACAACTGCCACGTCAGCCAAAAAGAGCTATTTGTATTCAACTTATCAAGATCAATGA 822 37.83 MNMETSSNEIVNEVDMLNASYDAFEGVIINIENDMDEYVFTTLLRTSISQWRQQGKKGVWLKLSLELVNLVKPAVKEGFWYHHAEPTYVMLVYWIPETSHTLPPNASHRVGVASFVVNNKGEVLVVQEKSGSFKGTGVWKLPTGTVEEGEDISLAAIREVKEETGIETEFMEVLAFRQSHKSFFSKSDLMFVCMLKPTSLDIQKQDSEIEAAEWMPVEEYANQPFIKNHKSFDSIAKICIAKKDDKYVGFSPLLTTTATSAKKSYLYSTYQDQ 273
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00322 273 CDD Nudix-Hydrolase-12 108 239 - -
Mimi17g00322 273 FunFam Nudix hydrolase 8 109 247 - -
Mimi17g00322 273 Pfam Nudix hydrolase domain 17 95 IPR040618 -
Mimi17g00322 273 Gene3D - 14 99 - -
Mimi17g00322 273 PRINTS NUDIX hydrolase family signature 139 153 IPR020476 -
Mimi17g00322 273 PRINTS NUDIX hydrolase family signature 153 168 IPR020476 -
Mimi17g00322 273 Pfam NUDIX domain 108 230 IPR000086 -
Mimi17g00322 273 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 105 123 IPR003293 -
Mimi17g00322 273 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 67 85 IPR003293 -
Mimi17g00322 273 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 193 217 IPR003293 -
Mimi17g00322 273 ProSiteProfiles Nudix hydrolase domain profile. 107 239 IPR000086 -
Mimi17g00322 273 ProSitePatterns Nudix box signature. 144 165 IPR020084 GO:0016787(InterPro)
Mimi17g00322 273 FunFam nudix hydrolase 2 14 100 - -
Mimi17g00322 273 PANTHER NUDIX HYDROLASE RELATED 5 271 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Mimi17g00322 273 SUPERFAMILY Nudix 75 238 IPR015797 -
Mimi17g00322 273 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 109 247 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00322 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:9010747 Mimi17g00322 Mimi-Chr17:9458009 dispersed
Mimi Mimi-Chr17:9340788 Mimi17g00322 Mimi-Chr17:9458009 dispersed
Mimi Mimi-Chr17:9458009 Mimi8g00233 Mimi-Chr8:9830676 dispersed
Mimi Mimi-Chr17:9438608 Mimi17g00322 Mimi-Chr17:9458009 tandem