AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mimi17g00333 | ATGGGTTACCATTGTGATCATTGTGGGGAAGCAAGATCAATGGTGTATTGTAGATCAGATGCAGCTTACTTATGTTTATCATGTGACCTAATCGTTCATTCTGCAAATGCATTATCAAAACGCCATTCAAGAACACTTGTATGTGATAGATGCAATTCACAGCCTGCATTGGTTAGATGCATAGAAGAAAAAGTCTCACTTTGTCAAAATTGTGATTGGGTTGCTCATAACGGGTCAACAAAACACAATAAACAGACGTTAAATTGTTATTCGGGTTGCCCTTCATCTTTAGAACTTTCTTCAATTTGGTCACATATATCAGATTCAGACTCAGGTTTTGTTAACGGTTCTACTTGTGAGCAAGAAATGGGTTCAATGAGCATTGCTGATAATAGCCAAGAACCTTTTAGAAGCAACAACAATAATGATAACAATCAAGATTTACTAACAAATGGTAATAATTCAAATGTTTGGACGGGTCCCTCGGGTGCTCATATTGGATCCACATATTCTTCTGCATCTAAGATATCACATTCGGGGACAAAAGACCCTGAACCGGTTCTTGATGATGACGGATTTTATGCTGACTTCAGTATGGATGAAGTTGACTTGGGCATTGAGAACTATGAAGAACTCTTTGGTGTAGGTCATAATGATCCTGAACATCTTTTTGCAAAAGATGGAATTGATGGTTTGTTTGGGGGTGCTGACTCTTCATATGCTGGAAAGGAATCATCAACAGGACATGCAAATCAAGCACAACCGGCGTGCAGTACTGCAGCATCAGCGGAATCGTTAATGAGCTGTAAAACTGAACCCAACCTGTGTTATGCAAGGCAACACTCGAATATCTTCTTCTCGAGTCTCACCGTGGAAAGCAGTGCAGGTGATTATCAAGACCGTGGGGCGTCTTCAAGGCTTCTGTTGGGCGAACCACCATGGTACAACTCAGGACCGGGACCTGGCCCGGCTCGTGATCAAACTGCCACCCCTTCAGGTAGCAGAAGTGATGCAGTCCTACGGTACAAGGAGAAAAAAAAGAGGCGAAAATTTGACAAGAGAGTAAGATATGCTACACGAAAGGAACGAGCCGACGTAAGAAAGCGTGTGAAAGGGCGGTTTGTGAAGACAGGTGATGCTTATGATTATGACCCATTGAAGATATGGGACGATGACTTCCCTTATGGCAGCGAAGTGACGTTCTTTCGGCCGAATTTGTCGTCGTACGGAATGGTGGTCAATGAGTCGATCGATGGTAGGAAGATGAAGTTGACAAATGTGTCGAAGAGAGAGGGAGAACACCGATGTTTTGAAGCTGAAGACGAAGAGGGGGTCGGAGATTGTGGCGGCATATGTCAAAATTCCGGTGGCGTCGATGTTTGGGGCATCATGGTCCGATCAACGGCATGCATACAACCAAATGCTAGTGTGTTGAGAAGCGGAAGAACATGCGGATGTATAAGAAGTAATGGGTGA | 1476 | 43.56 | MGYHCDHCGEARSMVYCRSDAAYLCLSCDLIVHSANALSKRHSRTLVCDRCNSQPALVRCIEEKVSLCQNCDWVAHNGSTKHNKQTLNCYSGCPSSLELSSIWSHISDSDSGFVNGSTCEQEMGSMSIADNSQEPFRSNNNNDNNQDLLTNGNNSNVWTGPSGAHIGSTYSSASKISHSGTKDPEPVLDDDGFYADFSMDEVDLGIENYEELFGVGHNDPEHLFAKDGIDGLFGGADSSYAGKESSTGHANQAQPACSTAASAESLMSCKTEPNLCYARQHSNIFFSSLTVESSAGDYQDRGASSRLLLGEPPWYNSGPGPGPARDQTATPSGSRSDAVLRYKEKKKRRKFDKRVRYATRKERADVRKRVKGRFVKTGDAYDYDPLKIWDDDFPYGSEVTFFRPNLSSYGMVVNESIDGRKMKLTNVSKREGEHRCFEAEDEEGVGDCGGICQNSGGVDVWGIMVRSTACIQPNASVLRSGRTCGCIRSNG | 491 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mimi17g00333 | 491 | SMART | bboxneu5 | 48 | 87 | IPR000315 | GO:0008270(InterPro) | |
| Mimi17g00333 | 491 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Mimi17g00333 | 491 | ProSiteProfiles | CCT domain profile. | 335 | 377 | IPR010402 | GO:0005515(InterPro) | |
| Mimi17g00333 | 491 | CDD | Bbox1-BBX-like | 47 | 87 | IPR049808 | - | |
| Mimi17g00333 | 491 | Pfam | CCT motif | 335 | 377 | IPR010402 | GO:0005515(InterPro) | |
| Mimi17g00333 | 491 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 4 | 381 | - | - | |
| Mimi17g00333 | 491 | MobiDBLite | consensus disorder prediction | 130 | 161 | - | - | |
| Mimi17g00333 | 491 | CDD | Bbox1-BBX-like | 5 | 47 | IPR049808 | - | |
| Mimi17g00333 | 491 | MobiDBLite | consensus disorder prediction | 309 | 337 | - | - | |
| Mimi17g00333 | 491 | ProSiteProfiles | Zinc finger B-box type profile. | 43 | 87 | IPR000315 | GO:0008270(InterPro) | |
| Mimi17g00333 | 491 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mimi17g00333 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 129219 | Mimi14g01100 | Mimi17g00333 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Mimi | Mimi-Chr14:21739044 | Mimi17g00333 | Mimi-Chr17:9827618 | dispersed | |
| Mimi | Mimi-Chr17:9827618 | Mimi3g01333 | Mimi-Chr3:26245533 | dispersed | |
| Mimi | Mimi-Chr17:9827618 | Mimi19g00993 | Mimi-Chr19:58847928 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Mimi19g01485 | . | 19 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 44.211 | 9.43e-92 | 277.0 | |
| Mimi19g01515 | . | 19 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 44.211 | 9.43e-92 | 277.0 | |
| Mimi18g00353 | . | 3 | 355 | C2C2-CO-like Transcription Factor family | AT1G68190 | 31.937 | 2.71e-48 | 166.0 | |
| Mimi18g01675 | . | 257 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 45.333 | 1.08e-11 | 62.0 | |
| Mimi18g01681 | . | 257 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 45.333 | 4.42e-12 | 63.2 | |
| Mimi17g00333 | ACH | 1 | 366 | C2C2-CO-like Transcription Factor family | AT3G07650 | 52.239 | 1.89e-126 | 371.0 | |
| Mimi17g00824 | . | 245 | 319 | C2C2-CO-like Transcription Factor family | AT3G02380 | 37.333 | 5.31e-10 | 57.0 | |
| Mimi15g02134 | WGDA | 4 | 74 | C2C2-CO-like Transcription Factor family | AT5G54470 | 65.278 | 4.28e-27 | 100.0 | |
| Mimi15g02315 | . | 13 | 54 | C2C2-CO-like Transcription Factor family | AT1G78600 | 66.667 | 1.72e-12 | 63.5 | |
| Mimi14g00446 | ACH | 281 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 54.902 | 5.29e-11 | 61.2 | |
| Mimi14g00986 | . | 3 | 223 | C2C2-CO-like Transcription Factor family | AT4G27310 | 39.013 | 1.49e-31 | 114.0 | |
| Mimi14g00995 | . | 3 | 223 | C2C2-CO-like Transcription Factor family | AT4G27310 | 39.013 | 1.49e-31 | 114.0 | |
| Mimi14g01060 | ACH,WGDA | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 53.185 | 5.91e-94 | 278.0 | |
| Mimi14g01070 | ACH | 1 | 249 | C2C2-CO-like Transcription Factor family | AT1G78600 | 54.331 | 2.06e-81 | 245.0 | |
| Mimi14g01100 | ACH | 86 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 50.0 | 2.44e-86 | 261.0 | |
| Mimi14g02442 | . | 13 | 54 | C2C2-CO-like Transcription Factor family | AT1G78600 | 66.667 | 1.56e-11 | 62.4 | |
| Mimi13g00542 | ACH | 284 | 329 | C2C2-CO-like Transcription Factor family | AT5G57660 | 54.348 | 5.43e-11 | 60.8 | |
| Mimi12g00983 | . | 1 | 222 | C2C2-CO-like Transcription Factor family | AT3G21150 | 28.326 | 1.10e-18 | 78.6 | |
| Mimi11g00962 | . | 1 | 319 | C2C2-CO-like Transcription Factor family | AT1G75540 | 40.663 | 1.71e-68 | 214.0 | |
| Mimi10g00145 | . | 4 | 91 | C2C2-CO-like Transcription Factor family | AT5G54470 | 57.303 | 1.56e-29 | 106.0 | |
| Mimi10g00246 | . | 1 | 183 | C2C2-CO-like Transcription Factor family | AT4G38960 | 56.696 | 1.04e-80 | 237.0 | |
| Mimi7g01356 | ACH | 334 | 388 | C2C2-CO-like Transcription Factor family | AT5G24930 | 49.091 | 2.99e-11 | 62.8 | |
| Mimi5g01273 | . | 223 | 314 | C2C2-CO-like Transcription Factor family | AT1G49130 | 44.681 | 6.20e-15 | 70.9 | |
| Mimi5g01551 | . | 8 | 328 | C2C2-CO-like Transcription Factor family | AT2G47890 | 46.006 | 1.52e-93 | 281.0 | |
| Mimi4g00870 | . | 45 | 406 | C2C2-CO-like Transcription Factor family | AT5G24930 | 48.571 | 8.96e-93 | 283.0 | |
| Mimi4g01131 | ACH,WGDA | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 53.526 | 1.71e-88 | 274.0 | |
| Mimi3g00101 | ACH | 1 | 224 | C2C2-CO-like Transcription Factor family | AT1G75540 | 48.899 | 2.55e-61 | 199.0 | |
| Mimi3g00113 | ACH | 1 | 224 | C2C2-CO-like Transcription Factor family | AT1G75540 | 49.339 | 3.95e-63 | 199.0 | |
| Mimi1g01053 | . | 306 | 386 | C2C2-CO-like Transcription Factor family | AT5G24930 | 41.463 | 1.55e-11 | 63.5 | |
| Mimi1g01862 | . | 11 | 398 | C2C2-CO-like Transcription Factor family | AT2G33500 | 37.246 | 1.83e-71 | 228.0 | |
| Mimi1g02130 | WGDA | 3 | 104 | C2C2-CO-like Transcription Factor family | AT4G27310 | 50.467 | 4.16e-31 | 111.0 | |
| Mimi1g02591 | . | 9 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 49.333 | 1.83e-110 | 325.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Mimi | CCT | 2.7e-15 | CL0281 | TF | C2C2-CO-like |