AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mimi17g00381 | ATGAGTTTCGGAGACGGTAGCCACGGTGCGCTAGGATTACCTACTTCCATCACAGGAATAGGTTCCAGCGCATACGAACCAACACCAATCTTAAACCTACCTCCAGACGTTTCCAGTGTCGCCGCCGGTCACTACCACTCTCTCGCCGTGACTTCTGAGGGCCACCTCTGGTCATGGGGTCGGAATGTCGAACACCAGCTTGGCCGTGCCGTTGATTCTCCTAGAGAAACATGGGTTGAACCGCAAAGGATAAGCGGTTTGAGTGGTGTCCGATCAGCGTCTGCATCGGGTGTCGTATCGGCAGCGATCGGAGTTGATGGATCTTTGTGGATTTGGGGGGAATCAAAGCGGGGTCAATTAGGGCTTGGAAATGGTATCACGGAGGCTGTTCTTCCCTCCAGGATTAAAGTTCTTGATAATGAAGAGATAATTAAGGTGGTCTCATTTGGATGGGGGCATGCTCTTGCACTAACCAAAGAAGGAAAGTTGTTTGGCTGGGGCTATTCAGCAGATGGAAGATTAGGAAAGAGAAGAATTGCAGGGGTTTCACAGCTTGATTCAAAGGCTAATTTGTCTTCAAGTTTGAATCTTGAAGATGCTGAGAAAGTGGTTTTGGAAGCTATCGACAAGGAGAACGATATGCCCATAATTTGGGAGCCATGTTTAATAGATGAACTAAATGGTGTTGAAGTTGCTGATGTGTCATGTGGGCTTGACCACACCTTGGTTCTTCTAAGTGATGGAACCTTACTCAGTGGTGGAAGCAATGCATATGGGCAATTGGGTAGATCAACACAAGATATAGAGTTTCTTCCAGTTGACATAACTGTCTACCCTGTTTCCATTGCTTCCGGGCTGGGCCATTCTTTAGCAATATGCCGAATCCCATCAGCAGATGGTGGTGGTGACATTTCAGGCATCTATTCATGGGGTTGGGGTCAGAATTCACAACTTGGTAGGGTGGGTCCCACCACCATCCCATTGCCCGTGGACGGACTTTTAGGGGAAAACCCATTTTCGGTTTCTGGTGGGCGTGTGCATTCCATTGCTGTCATGACCAGTGGAGAGCTTTTTTCATGGGGGTGTGGTAGAAATGGAAGGCTCGGGTTGGGTAGTTCTGCAGATGAGCTTGAACCCATGTTGGTTGAGTTTTCAGAAGATGTTAATGTTTTGCAAGCTGTCTCAGGGTTTGATCATACTCTAATCCTAACCAGCAGCTAA | 1221 | 47.83 | MSFGDGSHGALGLPTSITGIGSSAYEPTPILNLPPDVSSVAAGHYHSLAVTSEGHLWSWGRNVEHQLGRAVDSPRETWVEPQRISGLSGVRSASASGVVSAAIGVDGSLWIWGESKRGQLGLGNGITEAVLPSRIKVLDNEEIIKVVSFGWGHALALTKEGKLFGWGYSADGRLGKRRIAGVSQLDSKANLSSSLNLEDAEKVVLEAIDKENDMPIIWEPCLIDELNGVEVADVSCGLDHTLVLLSDGTLLSGGSNAYGQLGRSTQDIEFLPVDITVYPVSIASGLGHSLAICRIPSADGGGDISGIYSWGWGQNSQLGRVGPTTIPLPVDGLLGENPFSVSGGRVHSIAVMTSGELFSWGCGRNGRLGLGSSADELEPMLVEFSEDVNVLQAVSGFDHTLILTSS | 406 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mimi17g00381 | 406 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 231 | 260 | - | - | |
| Mimi17g00381 | 406 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 37 | 66 | - | - | |
| Mimi17g00381 | 406 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 24 | 405 | IPR051210 | - | |
| Mimi17g00381 | 406 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 248 | 295 | IPR000408 | - | |
| Mimi17g00381 | 406 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 107 | 160 | IPR000408 | - | |
| Mimi17g00381 | 406 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 40 | 50 | IPR000408 | - | |
| Mimi17g00381 | 406 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 1 | 53 | IPR000408 | - | |
| Mimi17g00381 | 406 | Gene3D | - | 1 | 204 | IPR009091 | - | |
| Mimi17g00381 | 406 | Gene3D | - | 207 | 406 | IPR009091 | - | |
| Mimi17g00381 | 406 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 54 | 106 | IPR000408 | - | |
| Mimi17g00381 | 406 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 355 | 406 | IPR000408 | - | |
| Mimi17g00381 | 406 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 234 | 244 | IPR000408 | - | |
| Mimi17g00381 | 406 | PRINTS | Chromosome condensation regulator RCC1 signature | 163 | 177 | IPR000408 | - | |
| Mimi17g00381 | 406 | PRINTS | Chromosome condensation regulator RCC1 signature | 147 | 163 | IPR000408 | - | |
| Mimi17g00381 | 406 | PRINTS | Chromosome condensation regulator RCC1 signature | 56 | 72 | IPR000408 | - | |
| Mimi17g00381 | 406 | PRINTS | Chromosome condensation regulator RCC1 signature | 107 | 123 | IPR000408 | - | |
| Mimi17g00381 | 406 | PRINTS | Chromosome condensation regulator RCC1 signature | 350 | 371 | IPR000408 | - | |
| Mimi17g00381 | 406 | PRINTS | Chromosome condensation regulator RCC1 signature | 37 | 50 | IPR000408 | - | |
| Mimi17g00381 | 406 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 106 | 157 | IPR000408 | - | |
| Mimi17g00381 | 406 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 354 | 403 | IPR000408 | - | |
| Mimi17g00381 | 406 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 307 | 351 | IPR000408 | - | |
| Mimi17g00381 | 406 | SUPERFAMILY | RCC1-BLIP-II | 2 | 405 | IPR009091 | - | |
| Mimi17g00381 | 406 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 161 | 247 | IPR000408 | - | |
| Mimi17g00381 | 406 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 305 | 354 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mimi17g00381 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Mimi | Mimi-Chr17:12445196 | Mimi8g00577 | Mimi-Chr8:25240551 | dispersed | |
| Mimi | Mimi-Chr17:12445196 | Mimi1g00764 | Mimi-Chr1:60176165 | transposed | |
| Mimi | Mimi-Chr17:12445196 | Mimi1g00727 | Mimi-Chr1:58380454 | transposed |