AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00385 ATGCTGGAGGTAGATCGAAAATCGAACCAGAGTAGTAATGGTGGCGATAAAAAGAAGAAGAAGATCATCAATAAATGGAAGCTGTGGGGATATATTGCATCTGTGATTGCAGTTTTAGTTGCCGTATATCTTAATCCATGGCGGCATTCTCTCAATTATTCACTCCTCCGTAAAACCTCCATTTGTTCTAAGGATGCTTGTGAATATACAGGCATTGTTGAGGAATGCTGTTGTGACTATGAGAGCATTAATGATATTAATGGTGCAGTTTTACATCCCTTGTTACAAGAGCTTGTCAAGACCCCTTTCTTTAGATATTTCAAGGTTAAGTTATGGTGTGATTGCCCATTCTGGCCAGATGATGGCATGTGCCGGTTACGTGATTGCAGTGTATGCGAATGTCCAGAACATGAATTCCCAGAATCTTTTAAAAAGCCATCACTGCATATTCTTCCAAAAGATGACCCTGTTTGTCAAGAGGGAAAACCTGAGGCTGCTGTTGATCGTACGTTAGATGCTAAATCTTTTAGAGGCTGGGTAGAAATTGATAATCCATGGACTCATGATGATGAAACTGATAATGGTGAAATGACATATGTAAATCTGCAACTGAACGCTGAACGCCATACAGGCTATACAGGACCATCAGCAAGAAGAATATGGGATTCTATATATTCAGAAAATTGTCCAAGATATGTGTATGGAGAAACATGTCCTGAGAAGAAAGTACTATACAAACTAATATCTGGTCTACACTCCTCAATTTCAAGCCATATAGCTGCTGATTATCTCCTTGACGAAACTACCAATAAGTGGGGTACAAATCTTGAACTGATGCATGACCGTGTCTTGAAACATTATGATCGTGTGGAAAATTTGTACTTCACTTTCCTGTTTGTTCTTAGAGCCGTAACAAAAGCAGCTGCTTATTTGGATCAAGCTGAGTATGATTCTGGTAACAATGTGGAGGATTTGAGAGCGCAATTCTTGATACGACAACTGGTTCATGATTCTAAATTGCAAGATGCGTGTGCTCTTCCGTTTGATGAGGCAGGACTGTGGCAGGGCCTAGGTGGGCCCATTCTCAGGCAGCAGATTCAAAATCAATTTCGAAACATCAGTGCACTAATGGACTGTGTAGGATGTGAGAAATGTCGTCTTTGGGGAAAACTACAAGTTCTTGGGCTTGGAACTTCATTACAAATTCTCTTCTTGGTTGATGATCTGGGAAACCCGGACCCACAACTGCAGTTACAAAGAAATGAAGTGATCGCTCTAATTAATCTACTAAATCGGCTATCAGAATCTCTTATATTTGTTAGTAAAATGAGAGATAATGTTGCTATAAACCCTCCTGCTACAGAAATAGGTTTAATTCACAGACTATGGGGATCATTAATAGCTCATTGGCAGTTTTCTGCAGTGTCTTATGACATGGATTATCTTCAAATCAATTTAGCTTGTGATGCTTATTCTTGCAAGTTATTAGAGGCGACAAGATTGCAGCAGTTTCCTGCTACCATTACAACTTTCAAACTCGAGCTTTTAGACTGTGAAATGTAA 1563 39.54 MLEVDRKSNQSSNGGDKKKKKIINKWKLWGYIASVIAVLVAVYLNPWRHSLNYSLLRKTSICSKDACEYTGIVEECCCDYESINDINGAVLHPLLQELVKTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPEHEFPESFKKPSLHILPKDDPVCQEGKPEAAVDRTLDAKSFRGWVEIDNPWTHDDETDNGEMTYVNLQLNAERHTGYTGPSARRIWDSIYSENCPRYVYGETCPEKKVLYKLISGLHSSISSHIAADYLLDETTNKWGTNLELMHDRVLKHYDRVENLYFTFLFVLRAVTKAAAYLDQAEYDSGNNVEDLRAQFLIRQLVHDSKLQDACALPFDEAGLWQGLGGPILRQQIQNQFRNISALMDCVGCEKCRLWGKLQVLGLGTSLQILFLVDDLGNPDPQLQLQRNEVIALINLLNRLSESLIFVSKMRDNVAINPPATEIGLIHRLWGSLIAHWQFSAVSYDMDYLQINLACDAYSCKLLEATRLQQFPATITTFKLELLDCEM 520
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00385 520 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 91 437 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Mimi17g00385 520 SUPERFAMILY ERO1-like 78 446 IPR037192 -
Mimi17g00385 520 PANTHER ERO1-RELATED 33 446 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(PANTHER)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0034975(PANTHER)|GO:0071949(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00385 K10950 ERO1-like protein alpha [EC:1.8.4.-]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:12482014 Mimi4g01147 Mimi-Chr4:22681844 dispersed