AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00392 ATGGCTTCTTCTTCTTCATGTTCTTCTGTTTCGAATTCTGTTTTGAGTAATCCTAAAAGCAGGTTTCTGTCATCTTCTAAAGATGTATTTGGTTCCAATTCATCGTCGATTTCCTTCTCTAAACGACCTAATTCTGGAAGGAATTCACAGAATTCGGTTGTTTGTGCACTTCAAACACCTTCGATTCTTCAAATTCCGAAACAGAGTCCTGTAAAAACTACCACTGGAACAATTGAATTTCCACCTTCTTCTTCAAAAGTCCAGCAAAATTGGAACCTGTTACAGAAACTTGCAGCAATGGCATTGGATGCCATTGAAGATGGAATAAAAGCTCAAGAAAAGCAACACCCTTTACCCAAAACCGCTGACCCAAATGTCCAAATCGCCGGGAACTTCTCACCGGTGCCGGAACAACCAGTCAAAAAATATTTACCCGTCGATGGAAAAATCCCAGATCATATTGAAGGAGTATACTTACGAAACGGAGCTAACCCGTTATTCGAACCCACCTCCGGCCACCATCTGTTTGACGGAGACGGGATCGGAGTGGCAAACGCCGGTTTGGTTTATTTCAACAACCGGCTGTTAGCGATGTCCGAAGACGATTTGCCGTATCACGTGCGAGTCACGCCCTCCGGTGACTTGAAAACTGCCGGCCGGTACAATTTTGACGGCCAATTGGAGTCCACCATGATCGCACACCCGAAGCTTGACCCAGTTTCCGGCGAGTTGTTTGCATTGAGCTATGATGTTATTCAAAAACCCTACCTGAAATACTTCAGGTTCTCACCGGACGGGAAGAAATCAAAAGATGTTGCTATCGATTTAGAGAAGCCTACTATGGTTCATGATTTTGCAATTACCGAGAATTTCGTGGTGGTGCCGGATCATCAGGTGGTTTTCAAGATGTCGGAGATGATCACTGGCGGTTCTCCGGTGGTGTACGATAAAGAGAAGGTGTCACGGTTTGGAGTTCTTGACAAATACGCAGAAAATGGGTCGGGTATTAAATGGGTCGAGGTTCCGGATTGTTTCTGTTTTCATCTCTGGAACGCATGGGAAGAACCCGAATCAGACGAGGTGGTTGTGATCGGGTCCTGCATGACTCCGGCGGACTCAATTTTCAACGAATGTAACGAGGAATTAAAAAGCGTGTTGTCAGAAATCCGTTTGAATTTAAAAACCGGCAAATCAACTCGCCGGAACATAATCTCGCCGGAAAATGATGTCAATTTGGAAGCCGGAATGGTGAACAAGAACCTCCTTGGCCGAAAATCAAGATTCGCGTATCTTGCAATCGCCGAGCCATGGCCGAAGGTTTCCGGGTTCGCTAAAGTCGATCTATTCACCGGCGAGACCAAGAAGTTCATCTACGGCGACCAGAAGTACGGCGGCGAGCCTCTGTTTCTTCCCAGGGATACCAATTCCGGCGAAGAAGACGACGGCCACATTCTGGCGTTCGTTCACGACGAGAATTCATGGAAATCGGAACTGCAAATCGTGAATGCGAAGACTATGGAATTAGAAGCCACCGTGAATCTGCCGTCGAGGGTTCCATACGGGTTCCATGGAACATTCATAAACGCCGGCGATTTGGCAACTCAGGCTTGA 1611 46.62 MASSSSCSSVSNSVLSNPKSRFLSSSKDVFGSNSSSISFSKRPNSGRNSQNSVVCALQTPSILQIPKQSPVKTTTGTIEFPPSSSKVQQNWNLLQKLAAMALDAIEDGIKAQEKQHPLPKTADPNVQIAGNFSPVPEQPVKKYLPVDGKIPDHIEGVYLRNGANPLFEPTSGHHLFDGDGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFDGQLESTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSPDGKKSKDVAIDLEKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAENGSGIKWVEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRRNIISPENDVNLEAGMVNKNLLGRKSRFAYLAIAEPWPKVSGFAKVDLFTGETKKFIYGDQKYGGEPLFLPRDTNSGEEDDGHILAFVHDENSWKSELQIVNAKTMELEATVNLPSRVPYGFHGTFINAGDLATQA 536
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00392 536 Pfam Retinal pigment epithelial membrane protein 182 527 IPR004294 GO:0016702(InterPro)
Mimi17g00392 536 Pfam Retinal pigment epithelial membrane protein 135 180 IPR004294 GO:0016702(InterPro)
Mimi17g00392 536 PANTHER BETA-CAROTENE DIOXYGENASE 111 180 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
Mimi17g00392 536 MobiDBLite consensus disorder prediction 1 51 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00392 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:12783147 Mimi17g02560 Mimi-Chr17:86167594 dispersed
Mimi Mimi-Chr17:12783147 Mimi9g01401 Mimi-Chr9:45846794 wgd