AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00448 ATGACTTCTTCTCATTTCATTTCTTCAACTTCCCTTGTGATTTTACTCACATTTCATCTAATTTCCACCATTTCTGAATCTGCAGTCCCTTCTTCACAAACATTCACCTACGTAAACGAAGGCGATTTCGGCGATTACGTCGTCGAATACGATGCCAATTATCGAGCACTTCCTCCTTTCAGCAGCCCATTTCAGCTTTGCTTCTACAACACCACCCCTAACGCATTCACCCTCGCCCTCCGCATGGGCACGGTTCGATCCGAATCGCTCATGCGATGGGTTTGGGAGGCTAACCGTGGCAACCCGGTTAAAGAAAATGCCACCCTCAAGTTTGGTACCGACGGGAACCTCGTCCTAGCCGATGCTGATGGCCGGGTCGTTTGGCAAACCAACACTGCCAACAAGGGTGTGGTCGGTTTTCAAGTGCTTCCAACCGGTAACATGGTTCTTCATGACGGTAAGGGTAAGTTCATATGGCAAAGCTTTGATTCACCAACCGACACTCTCTTGGTCGGTCAGACTCTCCGAGCCGGTGGTCCGAGTAAGCTCGTGAGTCGGTTTTCGGCCGAGAAGAACGCTGATGGACCGTATAGTTTGGTGTTGGAGCCTAAAGGGTTAGCCATGTATTACAAAAGTCCCAACTCGGCTAGACCGATGGTTTACTGGACGTCCAGCGAATGGTTCACGATTGACAAAGGTAGTTTAACCAATCTAACACTTACCTCGAACCCAGACACCGATGAGGGGTTTCTTTACTACTTAACATTCGATTACTTCACCACAAACCCCACATCGGGGTCTAACCGCAACATGGCGTTTTCGCGATACAACAACACGTTATCGTACCTTCGGTTAGAGATAGACGGGAACCTTAGGTTCTACACGTATAACCCAAACGTGCAAGGGGCCGCGTGGGAGGTGGTGTACACGTTTCTTGATCGTGACTCGATGGAAGGCGAATGTCAGTTACCGAGCCGATGTGGGAAGTTCGGGCTATGCGAGGATAACCAGTGTGTCGCGTGCCCGACCCCAAACGGGCTAAGTGGTTGGAGCAAGGATTGTGATGTAAAAAAGGTGACATCTTGTAAAGCTAGTGACTTTGGGTACTATAAGCTACAAGGGGTTGACCATTTTATGATCAAGTACACGAGGGGTGATGGGCCGACCAAACAAACCGATTGTGAGAGCAAATGCACCAAAGATTGCAAGTGTATGGGCTACTTCTATCACACAGATGGGTCCAGGTGTTGGATTGCTTACGATTTGAGAACGTTGACGAGAGTCGGCAACTCGACTCATTTGGCGTACATAAAATCACCCAACAAGTAG 1329 48.91 MTSSHFISSTSLVILLTFHLISTISESAVPSSQTFTYVNEGDFGDYVVEYDANYRALPPFSSPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVKENATLKFGTDGNLVLADADGRVVWQTNTANKGVVGFQVLPTGNMVLHDGKGKFIWQSFDSPTDTLLVGQTLRAGGPSKLVSRFSAEKNADGPYSLVLEPKGLAMYYKSPNSARPMVYWTSSEWFTIDKGSLTNLTLTSNPDTDEGFLYYLTFDYFTTNPTSGSNRNMAFSRYNNTLSYLRLEIDGNLRFYTYNPNVQGAAWEVVYTFLDRDSMEGECQLPSRCGKFGLCEDNQCVACPTPNGLSGWSKDCDVKKVTSCKASDFGYYKLQGVDHFMIKYTRGDGPTKQTDCESKCTKDCKCMGYFYHTDGSRCWIAYDLRTLTRVGNSTHLAYIKSPNK 442
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00448 442 CDD B-lectin 48 165 IPR001480 -
Mimi17g00448 442 ProSiteProfiles Bulb-type lectin domain profile. 45 163 IPR001480 -
Mimi17g00448 442 Pfam D-mannose binding lectin 94 177 IPR001480 -
Mimi17g00448 442 Pfam S-locus glycoprotein domain 233 346 IPR000858 GO:0048544(InterPro)
Mimi17g00448 442 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 38 439 IPR051343 -
Mimi17g00448 442 SMART blect-4 48 165 IPR001480 -
Mimi17g00448 442 Pfam PAN-like domain 388 418 IPR003609 -
Mimi17g00448 442 CDD PAN-AP-plant 361 440 - -
Mimi17g00448 442 PIRSF SLG 3 442 IPR035446 -
Mimi17g00448 442 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 210 IPR036426 -
Mimi17g00448 442 Gene3D - 93 226 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00448 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:14954459 Mimi17g00448 Mimi-Chr17:15199959 dispersed
Mimi Mimi-Chr17:15047201 Mimi17g00448 Mimi-Chr17:15199959 dispersed
Mimi Mimi-Chr17:15199959 Mimi19g00675 Mimi-Chr19:46829133 dispersed
Mimi Mimi-Chr17:15082709 Mimi17g00448 Mimi-Chr17:15199959 proximal