AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00465 ATGGATTCAGTGATATTAGATGCGGATAAAATAAGCAAAGGGAAGAGTAAGTGGGGAGAGGATAATAAAGTATACTCAAGAAGGTCTAAAACCACCGTCAATAACGCAGCCGTCTCCGTCGCCGCTACCACCATCATCTCTTCTCCAACCCCCACAACCACTGTCACCGCTACTTCACCACCGACCACCCTAAATAACGGTCAAATCGTAGCCACCGAACCCGAAAACCAACATACTTTATCTCAGGATCGGCAGGCCGCTGGAAATGGGTTGGTAAAACCGGTTGTTAGTTTGGTGGATGGTCGGGTCCAGATTAACCTACGGGCTTTGAAGTCTAAAGATGAAATTACCGAGCTTACAGAGACGATAAAGACTGAGCTTGAACAAGTTCGACGTGCGGTTCAAAGGCTGGAAGATAAAGAAGCTGAACTGACAGCGGTTTCTACCTATGTTGGTGTTGCTGGTGATGGTGATGGTGAGGCTTACGATCATTTGCAGTACTCTGGTGATGATATAGGTGACAGGAGAGCTTTGCTTAGGGCCAACTCTGAAATGGGTTCTGGTTTCGTGAATCGTAGAGCCTTGATGAGGATAAATTCTGAAGTGGGTTCGGTTACAAATAGTGATCTAAGGCCGTTTAGGCGGTTAAGTGTATCGGTTATGAGTAATAACCATGGAATTAGTGAGTTTGTGGAGAAAGAGAAGAGAACGCCAAAGGCAAATCAATACTATCGTAATTCTGATTTTCTTCTTGGAAAAGACAGATTACCCCCTGAAACGAACAAGAGGCGTAAATCTAACAGTGGTAGAAAACATAGCAAGGAATCCGATTATGGCAGGAATCAAATGTTAAAGAATTGCAATAATTTGCTGCAGAGATTAATGAGGCACAAGTTCAGTTGGGTGTTTAATGAACCGGTAAAGGCTAAAGAATTGGGACTTCATGATTATCATGATATTATTAAGCACCCAATGGATTTGGGCACGATCAAGAGTCGTCTTGCACAAAACTTCTACAAGTCTCCCATGGAGTTTGCAGAGGATGTTAGACTCACGTTTCGAAACGCGATGATTTATAACCAAAAAGGGCAAGATGTGCATTTTATGGCTGAGCAATTATCAAATATTTTTGAAGAAAGATGGGCTGTGATTGAATCAGAAACTAATCAAGATTTGAGATACGGAATGATTTATGATGCCAACACTCCAACTCCCACTTCAAGAAAGGTGCCTCATTTTGCTCATGCTCCTTCAAGAATGTTGTATAGGTCAGAATCAATGAGCTTGCCTGTGATGACTAGGCCAAAACCCTTTGTGCCAGCAGTTAGGACACCTGTACCAAAGAAACCTAAAGCCAAAGACCCTAATAAGAGGAACATGACTTATGAAGAGAAGCAGAAACTTAGTACAAATCTTCAGAGTTTACCTTCTGAAAAGCTTGACAGCATTGTGCAGATCATTAAAAAGAATACCTCACTTTCTCAACATGATGATGAGATTGAAGTTGATATTGATAGTGTTGATATCGAAACTCTTTGGGAACTCGATAGGTTTGTCACGAATTATAAAAAGAATTTGAGCAAGCATAAAAGGAAAGCTGCACTTGCTCAACAAGCAAGGGTAGAAGCTGGTGATATAAATCGAGCCATGAACCCATCAACATCTATTCCGGATGCCCCTAAAGAGAATAATACAAATGAAAAGATTCTTTCTGGTACACCTCTTAATGAAGGAGGGAGAGGAGATAATGCCAGTAGTTCAAGCAGTTCTAGCAGTGATTCTGGATCCTCTTCAAGTGATTCAGATAGTGATAGTTCATCCGAAGATGGATCAGATGCAGGTCATTCACCTAGAAGTTGA 1860 41.61 MDSVILDADKISKGKSKWGEDNKVYSRRSKTTVNNAAVSVAATTIISSPTPTTTVTATSPPTTLNNGQIVATEPENQHTLSQDRQAAGNGLVKPVVSLVDGRVQINLRALKSKDEITELTETIKTELEQVRRAVQRLEDKEAELTAVSTYVGVAGDGDGEAYDHLQYSGDDIGDRRALLRANSEMGSGFVNRRALMRINSEVGSVTNSDLRPFRRLSVSVMSNNHGISEFVEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRRKSNSGRKHSKESDYGRNQMLKNCNNLLQRLMRHKFSWVFNEPVKAKELGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPMEFAEDVRLTFRNAMIYNQKGQDVHFMAEQLSNIFEERWAVIESETNQDLRYGMIYDANTPTPTSRKVPHFAHAPSRMLYRSESMSLPVMTRPKPFVPAVRTPVPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDSIVQIIKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKNLSKHKRKAALAQQARVEAGDINRAMNPSTSIPDAPKENNTNEKILSGTPLNEGGRGDNASSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRS 619
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00465 619 MobiDBLite consensus disorder prediction 543 619 - -
Mimi17g00465 619 CDD Bromo-plant1 283 381 IPR037377 -
Mimi17g00465 619 ProSiteProfiles NET domain profile. 450 530 IPR027353 -
Mimi17g00465 619 SUPERFAMILY Bromodomain 263 389 IPR036427 GO:0005515(InterPro)
Mimi17g00465 619 PRINTS Bromodomain signature 330 348 IPR001487 GO:0005515(InterPro)
Mimi17g00465 619 PRINTS Bromodomain signature 298 311 IPR001487 GO:0005515(InterPro)
Mimi17g00465 619 PRINTS Bromodomain signature 348 367 IPR001487 GO:0005515(InterPro)
Mimi17g00465 619 PRINTS Bromodomain signature 314 330 IPR001487 GO:0005515(InterPro)
Mimi17g00465 619 MobiDBLite consensus disorder prediction 548 604 - -
Mimi17g00465 619 Coils Coil 116 147 - -
Mimi17g00465 619 MobiDBLite consensus disorder prediction 251 281 - -
Mimi17g00465 619 SMART bromo-6 276 386 IPR001487 GO:0005515(InterPro)
Mimi17g00465 619 MobiDBLite consensus disorder prediction 255 279 - -
Mimi17g00465 619 Gene3D - 250 394 IPR036427 GO:0005515(InterPro)
Mimi17g00465 619 Coils Coil 519 539 - -
Mimi17g00465 619 Gene3D - 453 532 IPR038336 -
Mimi17g00465 619 Pfam Bromodomain 287 371 IPR001487 GO:0005515(InterPro)
Mimi17g00465 619 Pfam Bromodomain extra-terminal - transcription regulation 460 520 IPR027353 -
Mimi17g00465 619 ProSiteProfiles Bromodomain profile. 295 367 IPR001487 GO:0005515(InterPro)
Mimi17g00465 619 PANTHER OSJNBA0053K19.4 PROTEIN 21 611 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00465 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:15896401 Mimi1g00250 Mimi-Chr1:15268412 dispersed
Mimi Mimi-Chr12:55253220 Mimi17g00465 Mimi-Chr17:15896401 transposed
Mimi Mimi-Chr14:24740480 Mimi17g00465 Mimi-Chr17:15896401 transposed
Mimi Mimi-Chr14:25097911 Mimi17g00465 Mimi-Chr17:15896401 transposed
Mimi Mimi-Chr15:66366317 Mimi17g00465 Mimi-Chr17:15896401 transposed
Mimi Mimi-Chr15:72967467 Mimi17g00465 Mimi-Chr17:15896401 transposed
Mimi Mimi-Chr2:21445929 Mimi17g00465 Mimi-Chr17:15896401 transposed
Mimi Mimi-Chr14:20561088 Mimi17g00465 Mimi-Chr17:15896401 wgd