AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00506 ATGGAGCATGCGAACGGCGTGAAGATGGCGGTAACATCTCAGGCATATTTGGAAGGATCTCAGGTCAAGCAAACTAAATCTCTCATCTCTGAGTTATGCCGTCTGTTTTACAACCTTGGCTGGGTTTCCGGCACCGGTGGAAGCATCACCGCCAAGGTCCACGACGATTCCGTCCCCAAATCGGACCAACTCGTAATCATGTCCCCCTCCGGTGTGCAAAAGGAAAGAATGGTGGAAGAAGATATGTATGTGTTATCTTCAACCGGCGATATTTTGTTTTCTCCATTGCCCAAGGGTTACCCTCACAAGCCTCCAAAATGTTCGGATTGTGCTCCTCTTTTCATGAAGGCTTATAATATGCGTAATGCTGGTGCAGTCATTCACAGTCATGGAATGGAATCTTGTATTGTGACAATGCTTGATCCTTTGGCAAAAGAGTTTAGGATCACTCATATGGAGATGATCAAAGGAATTCAAGGGCATGGTTATTATGATGAGCTTTTGGTTCCAATAATAGAAAACACTGCTCATGAAAGAGAGTTGACTGAATCTCTTGCTGCAGCTATTGAAGCATACCCAAAAACAACTGCTGTACTGGTGCGAAACCATGGTATTTATGTATGGGGTGATTCCTGGATCAGTGCCAAAACTCAGGCTGAATGCTACCACTATCTCTTTGAAGCTGCAATCAAACTTCACCAATTAGGCCTTGACTGGTCAACTCCAAGTCATGGTCCTCTTCAAAGTTCTAAACTTCTTTTAGGTGGTCAACCTACAAATGCATCTCAAAAGCATTGTATTGTTCTGGACATTGAAGGGACAACTACACCAATATCATTTGTGACAGATGTTCTTTTCCCATATGCCCAGAAAAATGTTCAAAGACATTTGGAAGAGACATATGATACTGATTTCACTCAAGATGATATCAAGTTGTTGCGATCTCAAGTTGAAGATGATTTACAGCATGGGGTTGTAGATGCTGTTCCAATTCCATCTAACGAGGCAGGAAAACAGGCGGTGATAGCTGCTTTGGTTGCTAATGTTGAAGGAATGATAAAATCTGACAGGAAAATTACTTCATTAAAACAGTTACAAGGTCACATATGGCGCACTGGATTTGAGAAAAATGAACTTAAAGGAGTTGTTTTTGATGATGTACCCCGCTCACTTGAAAAATGGCATGCTTCTGGTATAAAGGTGTACATTTATTCAAGTGGTAGCAGATTGGCACAGAGGTTGTTATTTGGATATACAGATTATGGGGACTTAAGGAATTACTTGTGTGGATTTTTTGACACCACAGTGGGGAACAAGAAAGAAACAAAAAGCTATATTGAAATTTCAGAATCACTTGGAGTTCACAAGCCTTCTGAAATCTTATTTGTGACTGATATTATTCAAGAAGCTGTTGCTGCCAAGGCAGCTGTTGTTTTGATACAGCCTGTTCATCGTTGTAAACTCCGTAGTACTACTCGATTACTCCCTGTCTACGCAAAGTACTTGCCGAAAAAAAACAAAAGATGCAAGGTGGGGGAAAGAATAGAAACACATGACAGTGAAACAAATTTGAAATGGAATTGGACTAGAAATGTTGTAGCAGGACCTGAGGAAAATGAGTTGAAATTATGCACAATAGAGTCAAAGAAGTTACAGGTGTCCAACGAGTTGGATCGATGGGAATGGGAAGGGGATACAACAGGTAATTACATGGTCCATTCTATTAAATGTAATATTGAAAATGAAATGTTTTCGGGAGACAATATGATATTTGAGAGATCAAAGTGGATTCCGATCAAGTTAAACTTCTTTGGATGGCGAGTGGGTCTTGATAGAATACCGACCCAGGTGGCTCTTGCAAAAAGAAACGTATGGATTTCAAGCACAGTATGTAACTCTTGCGGTCTAGAATTGGAGACTGTTGATCATCTCTTCCTACATTGTAACGTGGCAAATCAAGTGTGGGAATTGGTAAAGTCTTGGTGTAAAATATCAGGGAACATGGATTTGATCGGCGGGATGGATATCTTGGACGGAGTCGAATCTGGTTGTGTGGTTGGTTTGGATGATCCGGTTAGCATCTGGACTACTTGTTTGAAGGAAGTGGTGTCTGCTTGGACAAAGGTTGTTGGGTATGGATTTGGTTCGGATCTTGAAACGGGTCTTGGAGTTACCGGTGGTGTTTGGGTGGTGTGCCCATTGCTGTTACTACTGCTGCCGTTGCTTGCTGGAGAGTTCGCCGGAGATGGGTTTTCTTTATCTTGTTGTGTTGGTGTGATCTCCATTGATGGATTTGTGTTAAACTTTGATTTGGGTACGGAGAAGATGAAATGGATGGGGAAGAATGACAAAGAAGAGAATTTGAAGAGATTGAGGTTTTAA 2382 41.44 MEHANGVKMAVTSQAYLEGSQVKQTKSLISELCRLFYNLGWVSGTGGSITAKVHDDSVPKSDQLVIMSPSGVQKERMVEEDMYVLSSTGDILFSPLPKGYPHKPPKCSDCAPLFMKAYNMRNAGAVIHSHGMESCIVTMLDPLAKEFRITHMEMIKGIQGHGYYDELLVPIIENTAHERELTESLAAAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQAECYHYLFEAAIKLHQLGLDWSTPSHGPLQSSKLLLGGQPTNASQKHCIVLDIEGTTTPISFVTDVLFPYAQKNVQRHLEETYDTDFTQDDIKLLRSQVEDDLQHGVVDAVPIPSNEAGKQAVIAALVANVEGMIKSDRKITSLKQLQGHIWRTGFEKNELKGVVFDDVPRSLEKWHASGIKVYIYSSGSRLAQRLLFGYTDYGDLRNYLCGFFDTTVGNKKETKSYIEISESLGVHKPSEILFVTDIIQEAVAAKAAVVLIQPVHRCKLRSTTRLLPVYAKYLPKKNKRCKVGERIETHDSETNLKWNWTRNVVAGPEENELKLCTIESKKLQVSNELDRWEWEGDTTGNYMVHSIKCNIENEMFSGDNMIFERSKWIPIKLNFFGWRVGLDRIPTQVALAKRNVWISSTVCNSCGLELETVDHLFLHCNVANQVWELVKSWCKISGNMDLIGGMDILDGVESGCVVGLDDPVSIWTTCLKEVVSAWTKVVGYGFGSDLETGLGVTGGVWVVCPLLLLLLPLLAGEFAGDGFSLSCCVGVISIDGFVLNFDLGTEKMKWMGKNDKEENLKRLRF 793
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00506 793 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 22 247 - -
Mimi17g00506 793 Gene3D - 278 373 - -
Mimi17g00506 793 SFLD C1.5.4: Enolase-phosphatase Like 265 483 - -
Mimi17g00506 793 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 14 504 IPR027505 -
Mimi17g00506 793 SUPERFAMILY HAD-like 264 476 IPR036412 -
Mimi17g00506 793 Gene3D - 21 246 IPR036409 -
Mimi17g00506 793 Pfam haloacid dehalogenase-like hydrolase 266 476 - -
Mimi17g00506 793 Pfam Class II Aldolase and Adducin N-terminal domain 29 229 IPR001303 -
Mimi17g00506 793 SFLD enolase-phosphatase 265 483 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Mimi17g00506 793 CDD HAD-EP 266 469 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Mimi17g00506 793 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 14 238 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Mimi17g00506 793 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 278 374 - -
Mimi17g00506 793 NCBIfam acireductone synthase 266 478 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Mimi17g00506 793 NCBIfam methylthioribulose 1-phosphate dehydratase 29 235 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Mimi17g00506 793 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 4 248 - GO:0005737(PANTHER)|GO:0019509(PANTHER)|GO:0046570(PANTHER)
Mimi17g00506 793 SMART Aldolase-II-2 27 230 IPR001303 -
Mimi17g00506 793 Pfam zinc-binding in reverse transcriptase 587 655 IPR026960 -
Mimi17g00506 793 SUPERFAMILY AraD-HMP-PK domain-like 23 243 IPR036409 -
Mimi17g00506 793 Gene3D - 374 491 IPR023214 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00506 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Mimi17g00506 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Mimi17g00506 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:18099058 Mimi5g01749 Mimi-Chr5:76551779 dispersed
Mimi Mimi-Chr6:67141916 Mimi17g00506 Mimi-Chr17:18099058 transposed
Mimi Mimi-Chr17:18099058 Mimi4g02094 Mimi-Chr4:71435557 wgd