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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00558 ATGTCTCTCACCGATCAGCACCGTTCTCATTCTGATGGAAAGCACCGGCGATTTTTTCCGTTTTGGCAATCTGGAACAAAATCTTCGTTGCATTCGAATCATCTTCAATTTCAGAGTCAGAATAGCCAAGAAAACTGCGTCGCATCGAATGGCCGTTCTTCAAACAAGCTATCCTCGGTCGCGAAATCGCTTATACCGGCTCGGCGACGACTCCGGCTTGATCCGGCTAACAGTCTCTACTTTCCGTACGAGCCTGGTAAACAGGTGAAAAGTGCTGTTCGGATCAAGAACCATTGCAGTTCTTATGTTGCTTTTAAGTTTCAAACCACTGCTCCTAAGAGCTGTTATATGCGACCTCCTGGTGGTATTCTGGCTCCTGGGGAAAGCCTTATTGCTACAGTTTTCAAGTTTGTTGAGCAACCGGATAAAAACGAAAAACAAGGGGACCAAAGGAGCAGGGTCAAGTTCAAGATCATGAGCCTCAAGGTGAAAGAAGGAACAGACTTTGTGCCTGAACTGTTTGATGAGCAAAAGGATGAAGTAGTTGTTGAGCGCATTTTGCGTGTTGTATTCTTAGATGCGGACCGCCCTACCCCTGCATTGGAAAAACTAAAATATCAGCTGGCTGAAGCCGAAGCTGAATTAGAATTAAGGAAAAAACCTCAAGTGGATGCGAGTCCAAAAGTTGCGGCCCAAGGACTTGTTATAGATGAGTGGATGAAACCTTTGAATAAAGCTTGTTTTGTTGTAGGCATGGGAGCTGTTATAGGACTGAAACATCGCATGTTTAGACGCAAATCGCACTCCATTTGGCAAGTCGTTGGTCCATCGGTGGCTCAAGCATCGCATCAAGTCTTGATGGAAACAAGGAAACCAAGAGATGCCAAAGAATCATTGAGGGTTGTAGCTTATTTGAGTTGCTGGGGTCCTTACCAGTAA 939 45.26 MSLTDQHRSHSDGKHRRFFPFWQSGTKSSLHSNHLQFQSQNSQENCVASNGRSSNKLSSVAKSLIPARRRLRLDPANSLYFPYEPGKQVKSAVRIKNHCSSYVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEQPDKNEKQGDQRSRVKFKIMSLKVKEGTDFVPELFDEQKDEVVVERILRVVFLDADRPTPALEKLKYQLAEAEAELELRKKPQVDASPKVAAQGLVIDEWMKPLNKACFVVGMGAVIGLKHRMFRRKSHSIWQVVGPSVAQASHQVLMETRKPRDAKESLRVVAYLSCWGPYQ 312
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00558 312 Pfam MSP (Major sperm protein) domain 71 178 IPR000535 -
Mimi17g00558 312 SUPERFAMILY PapD-like 59 201 IPR008962 -
Mimi17g00558 312 Gene3D Immunoglobulins 66 194 IPR013783 -
Mimi17g00558 312 ProSiteProfiles Major sperm protein (MSP) domain profile. 70 192 IPR000535 -
Mimi17g00558 312 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 70 242 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00558 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr10:43480823 Mimi17g00558 Mimi-Chr17:20894502 dispersed
Mimi Mimi-Chr17:20894502 Mimi2g00956 Mimi-Chr2:72446364 dispersed
Mimi Mimi-Chr17:20894502 Mimi17g02987 Mimi-Chr17:93508715 wgd