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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00732 ATGGCCAGAAGCTCCTTCAAACTGGAACATCCTCTGGAGAGGCGTCAAGCGGAGGCTGCTCGTATCAGGGAAAAATATCCTGACAGAATCCCGGTTATTGTCGAGAAGGCTGAAAGAACCGACATACCTGACATAGACAAGAAGAAATACCTAGTACCTGCTGATCTGACAGTTGGACAGTTTGTTTATGTGGTGAGGAAGAGGATTAAGCTGAGTGCTGAAAAAGCCATATTTATCTTTGTGAAGAACATCCTGCCACCTACTGCTGCCATGATGTCTGCTATCTATGAAGAAAACAAAGACGAGGATGGTTTTCTATACATGACTTACAGTGGGGAGAACACGTTTGGGAGTCATTGA 360 44.72 MARSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGSH 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00732 119 FunFam Autophagy-related protein 1 117 - -
Mimi17g00732 119 Gene3D - 1 117 - -
Mimi17g00732 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 4 117 IPR004241 GO:0006995(PANTHER)
Mimi17g00732 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Mimi17g00732 119 CDD Ubl-ATG8 12 114 - -
Mimi17g00732 119 SUPERFAMILY Ubiquitin-like 4 117 IPR029071 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00732 K08341 GABA(A) receptor-associated protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr13:100063436 Mimi17g00732 Mimi-Chr17:39320403 dispersed
Mimi Mimi-Chr13:100635698 Mimi17g00732 Mimi-Chr17:39320403 dispersed
Mimi Mimi-Chr15:73698750 Mimi17g00732 Mimi-Chr17:39320403 dispersed
Mimi Mimi-Chr17:39320403 Mimi8g00262 Mimi-Chr8:10583178 transposed