AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00848 ATGGATTTAGTGCCTATCGAACCCTCAATTTGGGAAAATTCATTGTATAAAACAATTCCCAAATCTTCCCTTTTCGGATTATCAACAAGAAGATTGCATTGTACCGCCGGCGCCAGCAGATTCAGCAACAGGATTGTCCTCAGAAACTTTCGCGATTTGAGATTGTCAAGAGACATTAGGTACAGTGTTCTTCGTGAAGACAGAGGATTGAGATCTGTTTGGGTCAAAAGTAGCAGCACTGAGAGCCATTCAATTGTGGATTCCAATTTTCTTGAATTTTTGGTGAAAAGAGGGTTGATTTTGGTGGCTGCGTGTTGTGTGATGGGATGTAGAATGGCTGTGGCAGCTGAAGGGGTCTTGAATTCGGGAAATTTTGTGGGTTTTGATCAGATTAAACTGTCGATGGTGAATTCATTGCCTAAGGTTTTGATGGTTCTTAAGGTTTTGAAAGAACAGGGGTTAATCTTGGCTGCACTTTTTGGCCTTTCTGCGTTTTTTTCAATGGCTGAGACTTCAATCACCACTCTTTGGCCATGGAAGGTCCGCGAGTTGGCTGAGAAAGAGTCCGAGAATGGTGTGTTCAAAATGCTCCGCAACGATGTTACTCGGTTCTTAACAACCATTCTTATTGGCACCACTGTTGTAAACATTGGAGCAACAGCACTAGTTACTGAAGCAGCAACTGCAGTATTTGGTGAAGCAGGTGTTAGTGCAGCCACAGGAGTAATGACGGTTGCTGTTTTGTTGCTGACTGAAATAACTCCAAAAAGTATAGCTGTTCATAATGCCACTGAAGTTGCAAGAGTTGTGGTCAGGCCGATTGCATGGCTTTCTTTAGTCTTATATCCTGTTGGAAGAGTTGTAACATATCTCTCTATGGGAATGCTCAAGTTGCTTGGTCTCAAAGGAAGAAGTGAACCATATGTCACTGAGGATGAACTGAAGCTGATGTTACGAGGAGCTGAACTAAGTGGGGCCATAGAAGAGGAAGAACAAGATATGATCGAAAATGTTTTGGAAATAAAAGACACATATGTTCGTGAGGTGATGACACCTTTGGTTGATGTTGTAGCCAGTGATTCCAGTGCAACATTAGTTGATTTCCACACCTTGTGGGTGACTCATCAGTATTCAAGGGTACCAGTTTTTGAACAACGTGTGGATAATATAGTTGGTATTGCATATGCAATGGATCTATTAGACTATGTTCAGAAGGGAGATGTTCTAGAAAGTTCCACTGTGGGGGATGTGGCTCATAAGCCTGCTTATTTTGTGCCTGATTCAATGTCAGTATGGAATCTTCTTAGAGAATTTCGCATCAGGAAGGTACACATGGCTGTTGTTCTGAACGAATATGGTGGGACAGTTGGAATTGTAACACTGGAAGATGTGGTTGAAGAAATTGTTGGTGAAATTTTTGATGAAAATGATTCGAAAGAGGAAATAGATAAAAAGACTGGGTATATTGTGATGAGGGCTGAAGGAATTTATGATGTGGATGCAAATACCTCTATTGACCAGCTTTCTGAAGATCTCAACATAAAGATGCCAGAGGGTCATCAATATGAAACAGTGTCGGGTTTTGTTTGTGAGGCGTTTGGATACATCCCGAAAACAGGTGAACGTATAAAAGTGGTACTTGAGAAGGAAGAGGTTGATGATGAATATATTGAGGATGATGGCGATCGTCAAAATCAAAAAGAAATAGAAAAGAGCCAAATATTTCAAATAGAAATTTTAGCAGGCAATGCTAGAAAAGTTGGTGCGGTGAGGTTTGAACGGGTAAGCCATGAGGAGGACACAGACGTGAAGAAGGTAGTTCCAGTAATCACGGAACGGAAATGGGCTGATGATGATCATGATACAAATAGGATTGAGAATGATGATGATGTAATCCCACATGAGGGAGAATGA 1914 41.22 MDLVPIEPSIWENSLYKTIPKSSLFGLSTRRLHCTAGASRFSNRIVLRNFRDLRLSRDIRYSVLREDRGLRSVWVKSSSTESHSIVDSNFLEFLVKRGLILVAACCVMGCRMAVAAEGVLNSGNFVGFDQIKLSMVNSLPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATAVFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARVVVRPIAWLSLVLYPVGRVVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHTLWVTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDVLESSTVGDVAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIDKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPKTGERIKVVLEKEEVDDEYIEDDGDRQNQKEIEKSQIFQIEILAGNARKVGAVRFERVSHEEDTDVKKVVPVITERKWADDDHDTNRIENDDDVIPHEGE 637
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00848 637 ProSiteProfiles CBS domain profile. 418 475 IPR000644 -
Mimi17g00848 637 Pfam Cyclin M transmembrane N-terminal domain 154 331 IPR002550 -
Mimi17g00848 637 SUPERFAMILY CBS-domain pair 333 472 IPR046342 -
Mimi17g00848 637 SMART CorC-HlyC-2 490 596 IPR005170 -
Mimi17g00848 637 Pfam Transporter associated domain 492 595 IPR005170 -
Mimi17g00848 637 Gene3D - 325 480 IPR046342 -
Mimi17g00848 637 MobiDBLite consensus disorder prediction 616 637 - -
Mimi17g00848 637 Gene3D - 487 580 IPR016169 -
Mimi17g00848 637 FunFam Magnesium-cobalt efflux protein CorC 327 477 - -
Mimi17g00848 637 CDD CBS-pair-CorC-HlyC-assoc 346 466 IPR044751 -
Mimi17g00848 637 SUPERFAMILY FAD-binding-transporter-associated domain-like 488 601 IPR036318 GO:0050660(InterPro)
Mimi17g00848 637 ProSiteProfiles CNNM transmembrane domain profile. 145 331 IPR002550 -
Mimi17g00848 637 ProSiteProfiles CBS domain profile. 350 411 IPR000644 -
Mimi17g00848 637 PANTHER HEMOLYSIN-RELATED 118 605 - -
Mimi17g00848 637 Pfam CBS domain 346 404 IPR000644 -
Mimi17g00848 637 Pfam CBS domain 414 469 IPR000644 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00848 K03699 magnesium and cobalt exporter, CNNM family
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:47544937 Mimi9g01474 Mimi-Chr9:51347877 dispersed