AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00903 ATGGTTAGGGTGTTCTTGAGAACACTAACTCGGATTCCATCATATTGTCTTTCTCGCGCTACCTTTTCCACTGATTCTTCAAGTTTTGCTATAAAAAATGTCACTAAATCCAACTTTGATTCGTCATTGGCTGACCTTCGTCGACACATCAGAGACTCTGATTTTGTGTCAATTGACTTAGAAATGACAGGAGTCACAAGCTCTCCATGGAGGGAATCCTTTGAATTTGATAGATTTGACATTCGGTATCTCAAGGTGAAAGATTCTGCTGAGAAGTTTGCTGTTGTTCAGTTTGGAGTTTGCCCCTTTAGGTGGGATCCAACCAAGCAGTCCTTTATCGCGCACCCGCACAACTTTTACATATTTCCAAGGCAAGAAGTTGGAGATGATGGCTCATCATACGAGTTCCTGTGCCAGACTTCCTCAGTGGATTTCTTGGCAAAGTACCAGTTTGATTTTAACATGTGTGTAAAAGAAGGAATATCTTATTTATCCAGAGCACAAGAAGATGATGTTAGGCTGCAGTTACATTCAGCATATGAAAACGAGCCATCAGTGTCACCATTCACAGCTAAACAAAGTAAAGACGTTCCACTGCTTAGAATGGCAGATATTCTTTTTGTGGAGAGATTAAAGAACAAGATTAGTGAATGGCGTGATGACCTGTTACAGATTAGAAATGGAGTGTCCCGCCGGACACTGGAAGATTCTAATGACTCAATCGATCAGTTTCAGACTATTTTCTTCAGGACCCATCCAGCCATCAAATTGAATGGATTTACTTCTCGCCAACTAAGGTTAATCAAGTCGATTGTAGAAAAGAGCTTTAAAGATTTAACTTTCATCCGTGCAAATGAGGGTTCATGTTTTCAACAATTTATCGTCTACATAGACTCCAAAAGGGACCTAGAGTTGCTTATGAAAGAGTTTAAAGAAAGTCGTTTAAAGGAAGCAGAAATGAAGATTGAAGCCGCCATTGGCTTCCGCCATGTGATTGACCTTCTTTCATCTGAACAAAAGTTGATTGTTGGACATAATTGTTTTCTTGATATTGCACATATATGTAGAAAGTTTGTGGGGCCCCTTCCTTCCGATCTTGAGGAATATGTAGCATTAGTTAAAAAAAACTTCCCATTCATAATCGACACCAAAATTCTCTTAAATGCAAATGACACACTGCAGTTAAAAATGAAGAAAACTAGCACATCACTCGCCAAAGCGTTTGCTGTTCTTTGTCCTCATATTGCTTCTGGTGTTGGTAGTTTTGGTTCTGCTCATACCAATTCTGTTGCAGTAGAGGTTCAAGTCGATGATATGAGGTCATTAAATTGGAACTCTGGAGCTAAACATGAAGCTGGTTATGATGCTTTCATGACAGGCTGTATATTTGCCCAATCATGCAATCATCTTGGTATTAACTTCACCTCGCATTCAATGTTAACGAAAGAAGTCAAGCTTCAAAGCTACATCAATCTTCTTTACCTCAGCTGGTCTAGTGGAGACATAGTTGACCTAAAAACTGGTAATACCCGAACAGAATCTTCAGCATTCAATGGGCTCAAGATTCAACAACCAAAGATTCTGTTTCCAAATATCGTCTTAATTTGGGGATTCCCATCCAAGCTCAAAGCACAGGAGATAAAAGAATCTTTGACCAAAGTTTTTGGGTTGACTTCTGTTACATCCATCTTCCATTTGGATAAGACTGCTGTGTTTGTTCAGTTTAGCAAGCCTGAACTAGTTTCTGATTTTTTGAAACTAAAATCAAAGATCGAGAAAAAGAACGATGCGATTTATGTTCTGCACCCGTTTTCAGACCTTCTGGAAGGTGGGCTTACAGGTGCTGCTTGTTATGAGGTGTATAAAGAAATTTGTGGGTCACCTATTTCAAAACCCTTGTTTGCTGATCAAGCTGAAGCTAGTCTCCAAATGATACCAAGACAGCAGAAGCTTCTGGAGAAGGACTAG 1968 39.58 MVRVFLRTLTRIPSYCLSRATFSTDSSSFAIKNVTKSNFDSSLADLRRHIRDSDFVSIDLEMTGVTSSPWRESFEFDRFDIRYLKVKDSAEKFAVVQFGVCPFRWDPTKQSFIAHPHNFYIFPRQEVGDDGSSYEFLCQTSSVDFLAKYQFDFNMCVKEGISYLSRAQEDDVRLQLHSAYENEPSVSPFTAKQSKDVPLLRMADILFVERLKNKISEWRDDLLQIRNGVSRRTLEDSNDSIDQFQTIFFRTHPAIKLNGFTSRQLRLIKSIVEKSFKDLTFIRANEGSCFQQFIVYIDSKRDLELLMKEFKESRLKEAEMKIEAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHICRKFVGPLPSDLEEYVALVKKNFPFIIDTKILLNANDTLQLKMKKTSTSLAKAFAVLCPHIASGVGSFGSAHTNSVAVEVQVDDMRSLNWNSGAKHEAGYDAFMTGCIFAQSCNHLGINFTSHSMLTKEVKLQSYINLLYLSWSSGDIVDLKTGNTRTESSAFNGLKIQQPKILFPNIVLIWGFPSKLKAQEIKESLTKVFGLTSVTSIFHLDKTAVFVQFSKPELVSDFLKLKSKIEKKNDAIYVLHPFSDLLEGGLTGAACYEVYKEICGSPISKPLFADQAEASLQMIPRQQKLLEKD 655
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00903 655 Pfam CAF1 family ribonuclease 34 463 IPR006941 -
Mimi17g00903 655 Coils Coil 208 228 - -
Mimi17g00903 655 SUPERFAMILY Ribonuclease H-like 31 477 IPR012337 -
Mimi17g00903 655 Gene3D - 235 509 IPR036397 GO:0003676(InterPro)
Mimi17g00903 655 Gene3D - 33 194 IPR036397 GO:0003676(InterPro)
Mimi17g00903 655 PANTHER POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1 31 640 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00903 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:50647017 Mimi17g01491 Mimi-Chr17:66416872 dispersed