AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00929 ATGGCTTCATCTGGAAATCAAAATCAACAACCAGTTACAGGACAATTTGATGTTCAAAGATTATTCAACCCGATTTCATCACCATCACCACCGCCACAACCGATCACAGCTCTGCAAAACCCTAACAATCAGTACATTCTACCATCTTCCGCAGCATCGTATCCTCCTCCAACCGGCACCGGCAGTCCGTACGCTTACCAACCTCCTCAAACGAACCCTATTTTCCACCATCAATTCCATATTCCACCACCGCCGTTTACTAATCAACAGTCAGACGACAATCTCCCTTCTAGTTTGCAACATCAGCGATCGCTTCCGTACCCTAGCATCCCTCTTCAACCCCCTAGCCCTAATAACAAGAACCCTAACCCTAATCATGGAGCTCGATTAATGGCTCTATTAAGCGCCCCACCGCCTTCGACTCCTGATGTTCCGTCTCAAATATCGATGACATCACCTTCGGTTCCTTCACACAACCATAATTTCAACCCTTCGTCGCCAGGTCCGTCGCGGATGACTAGCAGTAAGCTGCCAAAGGGCCGGCATTTGATAGGTGATCGAGTTGTTTATGACATTGATGTTAGGTTGCCTGGAGAAATTCAGCCTCAACTTGAGGTTACTCCAATTACCAAATATGCGTCGGATCCTAATTTGGTGCTGGGTAGGCAGATTGCTGTTAACAAGACTTATATATGTTATGGGTTGAAACCTGGGACAATCAGGGTTCTTAACATCAACACTGCATTAAGATCATTGCTTAAGGGTCTTGTTCAGAGGGTTACGGATATGTCTTTCTTTGCAGAGGATGTTCATCTTTTAGCCAGTGCATACATGGATGGACGTGTTTACATATGGAAGATACTAGAAGCTCCTGATGAGGATGATAAGCCACAAATCACAGGAAAAATAGTTACTGCTGTCCAAATTCTTGGAGGAGGAGAACCTGTTCATCCTAGGGTTTGTTGGCACTGCCATAAACAAGAAGTTCTTGTAGTTGGAATTGGGAATTGTATTCTTAGACTTGATACTACAAAAATTGGCAGAGGTAAAGTATACTCAGCAGATGAACCTCTCAAATGCCCTGTTGACAAGTTGATTGATGGTATTCATTTTGTTGGTAAGCATGATGGTGAAATTACAGATCTATCCATGTGCCAATGGATGACCACTCGTTTAGTTTCTGCTTCAGTAGATGGAACGATAAAGATCTGGGAAGATCGTAAGTCTTCACCTATTGCAGTACTGAGGCCATACGATGGTCTTCCTGTTAGTTCTGTTACATTCTTAACTGCTCCACATCGCCCAGATCACATCATACTTATCACAGGGGGACCGTTGAATCGTGAAGTGAAAATATGGGCCTCTGAAAGTGAAGAAGGATGGTTGCTTCCTAGTGATGCAGATTCCTGGCATTGTACTCAAACATTGGAGTTTAAAAGCTCTGCTGAATCTAGAATTGAAGATGCGTTTTTCAATCAAGTAGTTGCATTATCTCAATCTGGGCTTCTTTTACTAGCAAATGCCAAAAGAAATGCTATATATGCTATACACTTGGATTATGGGCCCAATCCTGAAACAGCCCGTTTAGACTACATTGCAGAGTTCACTGTTACTATGCCAATATTGAGCTTTACTGGCACTAGTGATCTGTTACCAAATGGATGCCACATTGTTCAGCTTTATTGTGTCCAAACACAGGCCATTCAACAATATGCTTTGGACTTGTCCCAGTGCCTGCCACCCCTTGTTTGTGATGTCTATGAGAAATCTAGTTCAACTGTTTCATGTGATGCAACAGTTATTGGTTTGGAATCATCTGGTGGTAAATTGGATGAGATGTCTCAGGCTAGCCCAGGACTAAGCCCAAGACATGGTCCAGATGGGGCACCTACATTGAGCCCTAACGAGCTCAAGGACGCCGACACCGATGTCTCATGTATTGAATCACCAACGGTTCAATTGAGCCCTAAGTTGCCCGGAAAAGTTCCTGACTTTAAGAGTCCATCTGGCAGGTTTGAGCCACATCAGCAACTAAGCACTTATGATGATCAGAAAATCATGGGAGAAACACAATTGGAAACTGTTCGTTCGAACATATCTAATACCTCCTTGTTGGATGATGATGATTGGGCTGTCAAGTTTAAGCACCCAACTCATCTGGTAACTCCTGCTGAATTGATGGCCACATCATCCTGTGAGATAAATCATGTTGACGTTATGCATGATGTGGCAGTAAACTCTGATATACAGAATGCTGAGCTGGAGGTTAAGGTTGTAGGAGAAATTGGAATGAATCAAAATGCTGATATTGCCTTGAAAGCTGAACTTAATGGTTCTGCTTATGAAGAAAAGGAAAAATCTAGAACTTTCTCCTCACAGGCATCAGGACTTGGGCTTGATATGACACGTCATAATGAGTCTAAACAATTGGATAAAATTGCAGATGCTCAGGATGAAGCTGATGATGTGGCAACTGATCTAGCTGGATCAATTGAGATGGTTGTGACAGGAGTAGTTCAATCTGTGGGTCCCTCTTTACGAGAAAAGAAGAAGAAGAAAAAGAATGCTCAATTATCAGGTCAATCTTCTTCTTCTTCAAATGTCTTAAAGTCAGTTAATTCCTGTGATGAGCTAGGAGCGAGTTCAAGCATTCCCTCAGCAGAAGTTATACTTTCACAAATTCAGTCCATGCAAGAAACACTTAACCAGATTTTGATCAAACAAAAGGAAATCCAGAAGCAGATTCCAGCGGTTGCTGCAGTACCAATAACAAAAGAAGGGAAAAGAATTGAGGCAGCTATTGGTAAAAGCATGGAGAAAATTCACAAAGCTAATTCTGATGCTTATTTGGCTCGTTTCCAAGAAGAGTTTGCAAAGCAGGAAAAGTTTAGCAAAGACCACCATCAGCAAATATCGAATTCCGCGTCTAATGGCCACAAAGAATTTCTTGCTGCATCAGAGAAATTGCTCAAGAAGGAAATGGCTGCAGTGGTACCAGTTGTGGGGCGCTCAGTAATTCCAATCATTGAGAAAGCAGTCTCTACAGCTGTCTCAGAGGCTTTCCAGAGGGGAATAGGTGATAAAGCTGTGAATCAATTGGACAAAGCAGTTAATTCTAAACTGGAAGCTACTGTATCTAGACAAATTCAAGCTCAATTTCAAACTTCTGGCAAACAAGCTCTACAGGAAGCACTGAGATCAAATATGGAGGCTTCTGTTGTTCCCGCTTTTGAGACGTCTTGCAAATTAATGTTTGAGCAAGTTGATGCCACTTTTAACAAGGGAATGATTGAACACACAACTGCAATTCAACAGCAAGTCGAGTCTATGCATTCACCTTTGGCATTTGCTTTGAGGGATACCATCAATTCAGCATCATCTCTGAGTCAAACATTGAGCAGTGAATTTGCTGATGGTCAAAGGAAATTAATGGCTCTTGCAGTTGCTGGAGCAAATTCTAAATCAGCAAATCCATTGATAGGTCAACTAAGCAACGGGCCTTCAGGTGTTTTCCATGAGAAGATTGAAGCACCAGTGGACCCCACAAAAGAGCTTTCTAGGTTGGCATATGAGCACAAATTTGAGGAGGCCTTTACTGCTGCCTTGCAAAGAAGTGATGTTCGCATTGTCTCCTGGTTATGCTCTCAGGTTGATCTACAGGGGATATTAACAAGTAACCCTGTTTCTTTGAGTCAAGGGGTGCTGCTATCATTATTGCAACAATTGGCATGTGATATTGGAAGCGATACATCAAAGAAACTTGGTTGGATGATGGATGTGGTGGTGGCGATCAAACCAACGGATGGGATCATCGCAATGCATGTAAGGCCCATATTTGAACAAGTTTACTCCATTCTAAACCATCAGATGAGTCTTCCCACAACTTCAGTTGCTGAGCTTTCTAGTATTCGTGTGATCGATTTGAGATCGGGTTACCATCAACTGAGGATACAAGAGAATGACATTCCTAAGACAACCTTTAGGACGCGATATGGACACTATGAATTTTTGGTTATTCCCTTCGGACTGACCAATGCACCTGCTGTAATCATGGATCTCATGAATCGCGTATGCAAACCCTATCTCGACAAATTCGTGACAGTGTTCATTGACGATATCCTGATCTACTCCAAGAGTCAGGAAGAACATGCTGAACATCTGAGGCTATTTCTTGGACATGTGGTTAATGAGAAGGGAATACATGTAGACCCAACCAAGATTGAAGTCATCAAAAACTGGGAAGCACCCAAGACCCCGACTGAGGTGCGACAATTCCTAGGACTGGCAGGGTACTACAGGTGGTTTATCGAGGGATTCTTGAAGATCGCAAATCACTAA 4338 42.65 MASSGNQNQQPVTGQFDVQRLFNPISSPSPPPQPITALQNPNNQYILPSSAASYPPPTGTGSPYAYQPPQTNPIFHHQFHIPPPPFTNQQSDDNLPSSLQHQRSLPYPSIPLQPPSPNNKNPNPNHGARLMALLSAPPPSTPDVPSQISMTSPSVPSHNHNFNPSSPGPSRMTSSKLPKGRHLIGDRVVYDIDVRLPGEIQPQLEVTPITKYASDPNLVLGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLVQRVTDMSFFAEDVHLLASAYMDGRVYIWKILEAPDEDDKPQITGKIVTAVQILGGGEPVHPRVCWHCHKQEVLVVGIGNCILRLDTTKIGRGKVYSADEPLKCPVDKLIDGIHFVGKHDGEITDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPYDGLPVSSVTFLTAPHRPDHIILITGGPLNREVKIWASESEEGWLLPSDADSWHCTQTLEFKSSAESRIEDAFFNQVVALSQSGLLLLANAKRNAIYAIHLDYGPNPETARLDYIAEFTVTMPILSFTGTSDLLPNGCHIVQLYCVQTQAIQQYALDLSQCLPPLVCDVYEKSSSTVSCDATVIGLESSGGKLDEMSQASPGLSPRHGPDGAPTLSPNELKDADTDVSCIESPTVQLSPKLPGKVPDFKSPSGRFEPHQQLSTYDDQKIMGETQLETVRSNISNTSLLDDDDWAVKFKHPTHLVTPAELMATSSCEINHVDVMHDVAVNSDIQNAELEVKVVGEIGMNQNADIALKAELNGSAYEEKEKSRTFSSQASGLGLDMTRHNESKQLDKIADAQDEADDVATDLAGSIEMVVTGVVQSVGPSLREKKKKKKNAQLSGQSSSSSNVLKSVNSCDELGASSSIPSAEVILSQIQSMQETLNQILIKQKEIQKQIPAVAAVPITKEGKRIEAAIGKSMEKIHKANSDAYLARFQEEFAKQEKFSKDHHQQISNSASNGHKEFLAASEKLLKKEMAAVVPVVGRSVIPIIEKAVSTAVSEAFQRGIGDKAVNQLDKAVNSKLEATVSRQIQAQFQTSGKQALQEALRSNMEASVVPAFETSCKLMFEQVDATFNKGMIEHTTAIQQQVESMHSPLAFALRDTINSASSLSQTLSSEFADGQRKLMALAVAGANSKSANPLIGQLSNGPSGVFHEKIEAPVDPTKELSRLAYEHKFEEAFTAALQRSDVRIVSWLCSQVDLQGILTSNPVSLSQGVLLSLLQQLACDIGSDTSKKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVYSILNHQMSLPTTSVAELSSIRVIDLRSGYHQLRIQENDIPKTTFRTRYGHYEFLVIPFGLTNAPAVIMDLMNRVCKPYLDKFVTVFIDDILIYSKSQEEHAEHLRLFLGHVVNEKGIHVDPTKIEVIKNWEAPKTPTEVRQFLGLAGYYRWFIEGFLKIANH 1445
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00929 1445 FunFam enhancer of mRNA-decapping protein 4 205 519 - -
Mimi17g00929 1445 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1301 1419 IPR000477 -
Mimi17g00929 1445 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1188 1293 IPR049404 -
Mimi17g00929 1445 SUPERFAMILY WD40 repeat-like 223 518 IPR036322 GO:0005515(InterPro)
Mimi17g00929 1445 Gene3D - 1229 1312 IPR044938 -
Mimi17g00929 1445 Gene3D - 1320 1409 IPR043128 -
Mimi17g00929 1445 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 414 IPR001680 GO:0005515(InterPro)
Mimi17g00929 1445 MobiDBLite consensus disorder prediction 845 869 - -
Mimi17g00929 1445 MobiDBLite consensus disorder prediction 83 107 - -
Mimi17g00929 1445 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 39 1306 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Mimi17g00929 1445 MobiDBLite consensus disorder prediction 607 638 - -
Mimi17g00929 1445 FunFam Enhancer of mRNA-decapping protein 4 1230 1310 - -
Mimi17g00929 1445 SUPERFAMILY DNA-RNA polymerases 1298 1443 IPR043502 -
Mimi17g00929 1445 Coils Coil 894 914 - -
Mimi17g00929 1445 MobiDBLite consensus disorder prediction 38 57 - -
Mimi17g00929 1445 Gene3D - 1410 1445 IPR043128 -
Mimi17g00929 1445 MobiDBLite consensus disorder prediction 1 24 - -
Mimi17g00929 1445 MobiDBLite consensus disorder prediction 145 173 - -
Mimi17g00929 1445 SMART WD40-4 246 286 IPR001680 GO:0005515(InterPro)
Mimi17g00929 1445 SMART WD40-4 366 405 IPR001680 GO:0005515(InterPro)
Mimi17g00929 1445 MobiDBLite consensus disorder prediction 1 178 - -
Mimi17g00929 1445 Gene3D - 194 515 IPR015943 GO:0005515(InterPro)
Mimi17g00929 1445 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 206 518 IPR032401 -
Mimi17g00929 1445 CDD RT-LTR 1256 1406 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00929 K12616 enhancer of mRNA-decapping protein 4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:51874703 Mimi10g01049 Mimi-Chr10:51454340 dispersed
Mimi Mimi-Chr17:354751 Mimi17g00929 Mimi-Chr17:51874703 transposed
Mimi Mimi-Chr14:17929929 Mimi17g00929 Mimi-Chr17:51874703 wgd
Mimi Mimi-Chr17:51874703 Mimi4g01002 Mimi-Chr4:18897642 wgd