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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi17g00933 ATGAACACACACTTGAAGACGGTGAAGCTGACACTGAAAGGGAAAAATCCTGTAACCCTTGATCATTTGAGCGTGAGAGGCAATAATATTCGTTACTATATACTTCCCGACAGCTTAAATTTGGAAACTTTGCTAGTTGAAGAGACACCTCGAGTCAAGCCCAAGAAGCCAACTGCAGGGCGCCCTGTGGGACGTGGTCGGGGACGAGGGCGGGGCCGCGGACGTGGCCGTGGGCGTTAG 240 52.08 MNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 79
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi17g00933 79 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 74 IPR027141 GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER)
Mimi17g00933 79 Gene3D - 1 50 - -
Mimi17g00933 79 FunFam Small nuclear ribonucleoprotein Sm D1 15 47 - -
Mimi17g00933 79 MobiDBLite consensus disorder prediction 49 79 - -
Mimi17g00933 79 MobiDBLite consensus disorder prediction 58 79 - -
Mimi17g00933 79 SUPERFAMILY Sm-like ribonucleoproteins 1 78 IPR010920 -
Mimi17g00933 79 Pfam LSM domain 1 34 IPR001163 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi17g00933 K11087 small nuclear ribonucleoprotein D1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr17:52034401 Mimi5g01522 Mimi-Chr5:72906856 dispersed