AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi1g01854 ATGGAGGATGAATATGCAAAACTCATCAGGCGGATGAATCCACCCAGAGTTACAATCGACAACAAGTCATCCCCAGATGCAACAGTTATCCAGGTTGAAAGTGTTAATAAACATGGTATTCTGCTTGAAGTTGTGCAATTTCTTGCGGATTTAGATCTGGTCATCAAAAAAGCTTATATTTCATCAGATGGGGGATGGTTCATGGATGTGTTTAATGTTATATATCATGATGGAAGCAAAATTACAGATGAAAGGGTGGTCAGTTATATAAAAAAGGTGCTTGAAAAGGATGCTTTCTATGTACCATCATTGAATGGTTCAGTTGGGTTGAAGCCATCTGAAGATTACACAGTAATAGAATTAGTGGGAACAGACAGACCCGGATTATTATCTGAAGTGTCTGCGGTTCTAACCGCCCTCGGTTGCAATGTGGTCAATGCTGAAATATGGACCCACAACGCCCGAGCAGCAGCTGTGGTTCAAGTCACTGATAATAAAACAAAGTGTGCAGTTGAAGACCCGAAACGACTTTTGACCATCAAGAAACTTCTTTGTAACATTCTCAATGGAAACAATGATTTAAAGACTGCAAAAACAACACTTTCGCCCCCTGGTTTCATGCATCGACAGAGAAGACTGCATCAAATTATGTTTGCTGAGCGGGACTATGAAAAAATTGAAAAAACCGAACAAGAAAAGAAGAATAAATTAACAACGCGTGTTTATGTTCTAGATTGTGTTGAGAAGGATTACACGGTTGTTACTATGCATTGTAGGGATAGACCCAAGCTGCTGTTCGATATTATTTGCACTCTTACTGACATGCAATATGTAGTCTTTCATGGAGTGGTTCACACAGGGAATATGGAGGCTTTTCAGGAATATTACATCCGACATGTCGATGGAAGTCCAGTAAGCTCAGAGGCGGAGCGAGAGCGTGTTATACAATGCCTTGAAGCTGCAATTGAGCGGAGGACGTCTGAGGCGCTAGAGCTAGAACTATGCACAGCAGATCGCGTTGGACTTCTTTCGGATATAACCAGAATCTTTAGAGAAAATAGTTTGTGTATAAAAAGAGCAGAGATCTCAACTGAAGATGGAACAGCTAAAGACAAGTTTTATGTGACAGACATGACGGGTAGCAACCCTGTTGACCCGAAAACCATAGATTCGATTCGGAGGCAAATCGGCCAACAAGCAGCACTGCATGCTAGATGGAATTCTAGTCAATCATCAGACCCACAACCTGAAGAAACAACAATGGGATTTCTGTTTGGAAATCTGTTTAAATGCCGAACGTTGAAATTAGTCGGGTCCTAG 1320 41.29 MEDEYAKLIRRMNPPRVTIDNKSSPDATVIQVESVNKHGILLEVVQFLADLDLVIKKAYISSDGGWFMDVFNVIYHDGSKITDERVVSYIKKVLEKDAFYVPSLNGSVGLKPSEDYTVIELVGTDRPGLLSEVSAVLTALGCNVVNAEIWTHNARAAAVVQVTDNKTKCAVEDPKRLLTIKKLLCNILNGNNDLKTAKTTLSPPGFMHRQRRLHQIMFAERDYEKIEKTEQEKKNKLTTRVYVLDCVEKDYTVVTMHCRDRPKLLFDIICTLTDMQYVVFHGVVHTGNMEAFQEYYIRHVDGSPVSSEAERERVIQCLEAAIERRTSEALELELCTADRVGLLSDITRIFRENSLCIKRAEISTEDGTAKDKFYVTDMTGSNPVDPKTIDSIRRQIGQQAALHARWNSSQSSDPQPEETTMGFLFGNLFKCRTLKLVGS 439
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi1g01854 439 SUPERFAMILY ACT-like 326 401 IPR045865 -
Mimi1g01854 439 CDD ACT-ACR-3 251 325 - -
Mimi1g01854 439 SUPERFAMILY ACT-like 24 95 IPR045865 -
Mimi1g01854 439 Coils Coil 216 236 - -
Mimi1g01854 439 ProSiteProfiles ACT domain profile. 118 204 IPR002912 -
Mimi1g01854 439 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 7 406 IPR040217 -
Mimi1g01854 439 Pfam ACT domain 117 154 IPR002912 -
Mimi1g01854 439 Gene3D - 113 184 - -
Mimi1g01854 439 ProSiteProfiles ACT domain profile. 29 109 IPR002912 -
Mimi1g01854 439 ProSiteProfiles ACT domain profile. 331 409 IPR002912 -
Mimi1g01854 439 SUPERFAMILY ACT-like 113 173 IPR045865 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi1g01854 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr10:54759622 Mimi1g01854 Mimi-Chr1:89761848 dispersed
Mimi Mimi-Chr12:116759465 Mimi1g01854 Mimi-Chr1:89761848 dispersed
Mimi Mimi-Chr19:51338669 Mimi1g01854 Mimi-Chr1:89761848 dispersed
Mimi Mimi-Chr1:89761848 Mimi9g00035 Mimi-Chr9:791907 dispersed
Mimi Mimi-Chr1:89761848 Mimi12g02619 Mimi-Chr12:116622867 wgd
Mimi Mimi-Chr1:89761848 Mimi19g01001 Mimi-Chr19:59044222 wgd