AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi1g01858 ATGGCCGTCAAGACAGCGATTCAATTCTCCGATATATCGCATTTGGATCAGGTCAATGATACCCCCGCCTCATTGGCTCTGCACGCCACCCGTCTTCCAACCGGATTGGATGTGAGCAATGGGCGGAAAATTGTACCAAAATTCATGGTGGTAGGCCACCGGGGACATGGTATGAACGTCTTACAGTCAACGGATAAGAGAATGAAAACTTATAAAGAGAATTCAATTCTTTCATTCAATAACGCTGCTAATCACCCGCTTGATTTCATTGAATTTGATGTTCAGGTGACAAAAGACAATACACCAGTTATTTTCCATGATGATTTCATCCTCTCCGAAGAGAATGGTAACATAGTTGAGAAAAGAATCACCGAGTTGACTTTGGATGAGTTCTTTAGTTATGGTCCTCAAAGAGAAACCGGTCAGACGGGCAAAACTTTGATGAGAAAATCAAATGGAAAGATCGTCGGGTGGGATGTCGAGGTCGATGATCATTCGTGTACTCTTGAAGAAGCATTCCAGAAAGTAAACCCGTGTTTGGGATTCAACATCGAGTTGAAATTCGATGATTATGTAGTTTATGAACACGAGTATCTCATTCATGTTCTTCAAGTCATCTTAAAGGTGGTACATGAAAACGCCCTCGAAAGACCTATAATTTTCTCAAGCTTCCAGCCTGATGTGGCTTTGATTATGAAGAAGCTTCAGCATAAATACCCGGTGTACTTCTTGACGAATGGCGGAAACGAGATATTCACCGACGTGAGAATGAACTCGTTAGAAGAGGCGAAGAAGCACGCGATATCGGGCGGTTTGGATGGAGTTGTTTCAGAAGTAAGGGGTGTATTTAGAAACCCATCAGTAGTTAGGGAGATTAAAGAATCAAATCTCTCCCTCCTTACTTATGGCAAATTAAATAACATCCCAGAAGCCGTACATGTTCAATATCTCATGGGCATAGAGGGTGTAATTGTGGATTTAGTACAAGAAATCACAAGTGCAGTTGAAGTTTTAAAAACAGGAGTTGAAGGAGATAACACAGATAAGATTGAACTGTTGATTTCACAAGTGATTCAGCATTGA 1083 41.27 MAVKTAIQFSDISHLDQVNDTPASLALHATRLPTGLDVSNGRKIVPKFMVVGHRGHGMNVLQSTDKRMKTYKENSILSFNNAANHPLDFIEFDVQVTKDNTPVIFHDDFILSEENGNIVEKRITELTLDEFFSYGPQRETGQTGKTLMRKSNGKIVGWDVEVDDHSCTLEEAFQKVNPCLGFNIELKFDDYVVYEHEYLIHVLQVILKVVHENALERPIIFSSFQPDVALIMKKLQHKYPVYFLTNGGNEIFTDVRMNSLEEAKKHAISGGLDGVVSEVRGVFRNPSVVREIKESNLSLLTYGKLNNIPEAVHVQYLMGIEGVIVDLVQEITSAVEVLKTGVEGDNTDKIELLISQVIQH 360
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi1g01858 360 FunFam Glycerophosphodiester phosphodiesterase GDPD2 39 337 - -
Mimi1g01858 360 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 44 336 IPR051578 GO:0046475(PANTHER)
Mimi1g01858 360 ProSiteProfiles GP-PDE domain profile. 48 335 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Mimi1g01858 360 Gene3D Phosphatidylinositol (PI) phosphodiesterase 43 336 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Mimi1g01858 360 Pfam Glycerophosphoryl diester phosphodiesterase family 53 328 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Mimi1g01858 360 SUPERFAMILY PLC-like phosphodiesterases 46 329 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi1g01858 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr9:7718537 Mimi1g01858 Mimi-Chr1:89884129 transposed
Mimi Mimi-Chr1:89884129 Mimi1g02757 Mimi-Chr1:105137352 wgd