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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi2g00073 ATGCTAATCCAAGCTTCTAATGAAGATGACAATCATACCCCTTATTTTCTTTCTCCAATTCTCCAACCTTGCAGCACTTCTCAAGACTTTGATGGAGTTGGCTCATTCATGGAGCAAAGATCATTGATGTCGAATTATGCGACGGATGTATGCGATCAAGAAACCAACGGCGGTGAGGATGAGGCATCGGATGATGGTGGTGAGAGAAAGAAAAGGCTAAATATAGAACAAGTGAAGACACTTGAAAGAAGCTTTGAGTTGGAGAGTAAACTTGACCCAGATAGGAAAATGCAGCTGGCAAGGGCACTAGGGCTGCAACCAAGACAGATTGCCATTTGGTTCCAAAATAGAAGGGCAAGATGGAAAACAAAGCAATTGGAAAAAGATTATGATGTGCTCAAGAAACAGTTTGAAGTTGTCAAAGCTCAAAATGATTCCCTTTTGTCTCAAAATCACAAACTTCGGGTTCAGATAATGGCACTCAAGAACAAAGAGAAAACCGAATCAATCAACCTCAACATCAAAGAAACCGAAGGGTGTTGCAGCAACAAAAGTGAAAACAGTTCTGATCAGATCAAACATGAAGACATTTCAAGAACATTACATCACCATCACCAGCAACCAATCACAAATCTCTCTCAATCCGCCATTGTTGATCATACATCTCATCAGATCTTCCATAACTCATCATTAAGACCAGAATATCATCATCATCATCATCATCATCTGCATGTCCAGAAACTTGATCAACCTGTCAACAATAAAGATGAAAGCTTGTGCAACATGTTTGTTGGGATTGAAGATCAAACGGGGTTTTGGCCATGGTTAGAACAACCATCACAATTCAATTGA 852 39.91 MLIQASNEDDNHTPYFLSPILQPCSTSQDFDGVGSFMEQRSLMSNYATDVCDQETNGGEDEASDDGGERKKRLNIEQVKTLERSFELESKLDPDRKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQFEVVKAQNDSLLSQNHKLRVQIMALKNKEKTESINLNIKETEGCCSNKSENSSDQIKHEDISRTLHHHHQQPITNLSQSAIVDHTSHQIFHNSSLRPEYHHHHHHHLHVQKLDQPVNNKDESLCNMFVGIEDQTGFWPWLEQPSQFN 283
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi2g00073 283 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mimi2g00073 283 Coils Coil 116 164 - -
Mimi2g00073 283 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Mimi2g00073 283 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Mimi2g00073 283 FunFam Homeobox-leucine zipper protein ATHB-13 60 128 - -
Mimi2g00073 283 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Mimi2g00073 283 Pfam Homeodomain 70 122 IPR001356 GO:0003677(InterPro)
Mimi2g00073 283 MobiDBLite consensus disorder prediction 49 70 - -
Mimi2g00073 283 SUPERFAMILY Homeodomain-like 60 126 IPR009057 -
Mimi2g00073 283 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Mimi2g00073 283 SMART HOX-1 67 128 IPR001356 GO:0003677(InterPro)
Mimi2g00073 283 Gene3D - 61 131 - -
Mimi2g00073 283 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mimi2g00073 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 246 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi2g00073 K09338 homeobox-leucine zipper protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
129398 Mimi15g02311 Mimi2g00073
130138 Mimi1g01986 Mimi2g00073
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr1:92004937 Mimi2g00073 Mimi-Chr2:2124893 dispersed
Mimi Mimi-Chr2:2124893 Mimi5g00728 Mimi-Chr5:56101509 dispersed
Mimi Mimi-Chr11:35034177 Mimi2g00073 Mimi-Chr2:2124893 wgd
Mimi Mimi-Chr15:93246172 Mimi2g00073 Mimi-Chr2:2124893 wgd
Mimi Mimi-Chr15:70950438 Mimi2g00073 Mimi-Chr2:2124893 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi19g00262 ACH 32 720 Homeobox Transcription Factor family AT1G73360 57.947 0.0 824.0
Mimi19g01305 . 355 836 Homeobox Transcription Factor family AT1G52150 76.543 0.0 766.0
Mimi18g01717 . 1 223 Homeobox Transcription Factor family AT2G22800 51.915 2.30e-59 187.0
Mimi18g01741 . 1 223 Homeobox Transcription Factor family AT2G22800 51.271 4.37e-59 186.0
Mimi17g01800 . 163 291 Homeobox Transcription Factor family AT5G06710 51.064 3.28e-36 128.0
Mimi17g01801 . 167 295 Homeobox Transcription Factor family AT5G06710 54.286 1.02e-35 130.0
Mimi17g02430 WGDA 36 1540 Homeobox Transcription Factor family AT1G28420 46.489 0.0 1137.0
Mimi17g02713 . 28 73 Homeobox Transcription Factor family AT2G46680 65.217 7.02e-15 67.0
Mimi16g00245 . 37 307 Homeobox Transcription Factor family AT5G06710 50.938 1.02e-78 242.0
Mimi16g01875 . 1 762 Homeobox Transcription Factor family AT4G21750 75.524 0.0 1159.0
Mimi15g00037 . 58 287 Homeobox Transcription Factor family AT4G40060 50.0 8.35e-65 201.0
Mimi15g00191 . 909 1143 Homeobox Transcription Factor family AT5G44180 28.452 2.50e-10 62.0
Mimi15g00229 . 903 1143 Homeobox Transcription Factor family AT5G44180 27.755 1.80e-10 62.8
Mimi15g00861 . 11 217 Homeobox Transcription Factor family AT2G18550 54.106 5.21e-70 211.0
Mimi15g00935 WGDA 33 278 Homeobox Transcription Factor family AT4G37790 36.992 3.19e-29 107.0
Mimi15g01040 ACH 22 738 Homeobox Transcription Factor family AT4G36870 45.812 7.71e-158 471.0
Mimi15g01103 . 20 290 Homeobox Transcription Factor family AT1G69780 47.387 3.95e-70 220.0
Mimi15g01359 WGDA 1 290 Homeobox Transcription Factor family AT1G62990 77.258 3.40e-171 474.0
Mimi15g01401 ACH,WGDA 114 611 Homeobox Transcription Factor family AT5G41410 43.889 1.16e-120 366.0
Mimi15g01438 ACH 114 611 Homeobox Transcription Factor family AT5G41410 43.956 1.00e-118 361.0
Mimi15g01484 . 29 144 Homeobox Transcription Factor family AT2G46680 55.556 7.00e-35 121.0
Mimi15g01864 WGDA 152 447 Homeobox Transcription Factor family AT4G32980 52.09 1.69e-92 287.0
Mimi15g01880 . 1 822 Homeobox Transcription Factor family AT5G46880 52.262 0.0 804.0
Mimi15g02289 . 1 205 Homeobox Transcription Factor family AT1G27050 43.689 1.50e-52 165.0
Mimi15g02290 WGDA 66 272 Homeobox Transcription Factor family AT3G01470 40.171 7.33e-42 143.0
Mimi15g02311 ACH,WGDA 15 294 Homeobox Transcription Factor family AT1G69780 58.9 1.89e-103 302.0
Mimi15g02323 WGDA 15 294 Homeobox Transcription Factor family AT1G69780 56.856 1.59e-94 278.0
Mimi14g00353 WGDA 1 284 Homeobox Transcription Factor family AT4G16780 62.162 1.12e-111 322.0
Mimi14g01158 . 102 482 Homeobox Transcription Factor family AT2G16400 51.701 7.64e-134 398.0
Mimi14g01324 WGDA 119 670 Homeobox Transcription Factor family AT3G19510 41.681 3.22e-117 367.0
Mimi14g01885 . 441 505 Homeobox Transcription Factor family AT1G28420 58.209 3.80e-15 68.9
Mimi14g02041 . 91 545 Homeobox Transcription Factor family AT4G29940 52.017 2.72e-151 457.0
Mimi13g00147 ACH,WGDA 1 790 Homeobox Transcription Factor family AT5G60690 78.473 0.0 1311.0
Mimi13g00231 ACH,WGDA 1 680 Homeobox Transcription Factor family AT2G35940 43.902 3.10e-138 417.0
Mimi13g00376 WGDA 3 823 Homeobox Transcription Factor family AT4G32880 75.392 0.0 1314.0
Mimi13g00419 WGDA 1 418 Homeobox Transcription Factor family AT5G25220 62.128 0.0 526.0
Mimi13g00535 ACH 83 611 Homeobox Transcription Factor family AT5G41410 50.262 6.01e-147 437.0
Mimi13g01405 ACH 12 280 Homeobox Transcription Factor family AT1G75430 55.147 3.36e-98 293.0
Mimi13g02013 . 91 398 Homeobox Transcription Factor family AT4G08150 69.136 2.32e-142 408.0
Mimi12g01255 WGDA 1 836 Homeobox Transcription Factor family AT1G52150 79.643 0.0 1382.0
Mimi12g01314 . 70 836 Homeobox Transcription Factor family AT1G52150 78.729 0.0 1246.0
Mimi12g02240 . 45 287 Homeobox Transcription Factor family AT4G40060 40.079 5.21e-45 152.0
Mimi12g02322 . 160 323 Homeobox Transcription Factor family AT5G06710 50.898 3.10e-47 157.0
Mimi12g02747 ACH 7 292 Homeobox Transcription Factor family AT1G69780 46.102 1.06e-71 220.0
Mimi11g00199 ACH 22 396 Homeobox Transcription Factor family AT4G36870 35.264 2.38e-31 123.0
Mimi11g00200 ACH 405 731 Homeobox Transcription Factor family AT4G36870 57.759 6.81e-115 348.0
Mimi11g00202 . 22 396 Homeobox Transcription Factor family AT4G36870 35.013 4.05e-30 119.0
Mimi11g00437 ACH 22 278 Homeobox Transcription Factor family AT4G37790 54.647 2.37e-78 236.0
Mimi11g00869 . 1 314 Homeobox Transcription Factor family AT5G06710 50.975 2.45e-87 264.0
Mimi11g00947 ACH 110 359 Homeobox Transcription Factor family AT2G16400 58.175 6.04e-100 308.0
Mimi11g01077 . 31 164 Homeobox Transcription Factor family AT3G01470 57.554 1.01e-47 159.0
Mimi10g00081 . 3 1435 Homeobox Transcription Factor family AT5G44180 50.198 0.0 1307.0
Mimi10g00580 . 6 736 Homeobox Transcription Factor family AT4G04890 79.973 0.0 1191.0
Mimi10g00615 ACH 95 375 Homeobox Transcription Factor family AT1G62360 69.444 6.01e-125 362.0
Mimi10g01031 . 1 798 Homeobox Transcription Factor family AT4G00730 65.64 0.0 1065.0
Mimi9g00005 . 16 463 Homeobox Transcription Factor family AT4G02560 58.022 5.07e-165 502.0
Mimi9g00044 WGDA 1 290 Homeobox Transcription Factor family AT1G62990 72.635 1.08e-158 441.0
Mimi9g00086 ACH,WGDA 192 381 Homeobox Transcription Factor family AT5G41410 47.917 6.89e-47 163.0
Mimi9g00342 . 12 133 Homeobox Transcription Factor family AT2G46680 53.175 9.95e-41 136.0
Mimi9g00361 . 12 133 Homeobox Transcription Factor family AT2G46680 53.175 9.95e-41 136.0
Mimi9g00540 WGDA 152 419 Homeobox Transcription Factor family AT4G32980 48.913 4.78e-71 230.0
Mimi9g01043 . 1 418 Homeobox Transcription Factor family AT5G25220 61.466 5.55e-170 481.0
Mimi8g01037 WGDA 47 418 Homeobox Transcription Factor family AT5G25220 67.662 3.24e-178 504.0
Mimi8g01066 WGDA 7 812 Homeobox Transcription Factor family AT4G32880 74.908 0.0 1269.0
Mimi8g01119 . 71 234 Homeobox Transcription Factor family AT5G03790 49.432 1.39e-40 140.0
Mimi8g01142 ACH,WGDA 282 680 Homeobox Transcription Factor family AT2G35940 54.048 7.05e-111 345.0
Mimi8g01302 ACH 251 584 Homeobox Transcription Factor family AT2G27990 42.373 1.97e-87 283.0
Mimi8g01306 ACH,WGDA 1 842 Homeobox Transcription Factor family AT5G60690 77.032 0.0 1372.0
Mimi7g00339 . 139 312 Homeobox Transcription Factor family AT5G06710 72.376 1.17e-80 242.0
Mimi7g00354 . 1 312 Homeobox Transcription Factor family AT5G06710 46.927 5.25e-81 249.0
Mimi7g00434 . 247 736 Homeobox Transcription Factor family AT4G04890 79.065 0.0 785.0
Mimi7g00470 . 318 803 Homeobox Transcription Factor family AT3G61150 43.621 6.35e-122 374.0
Mimi5g00049 WGDA 7 809 Homeobox Transcription Factor family AT1G52150 75.246 0.0 1244.0
Mimi5g00563 ACH 106 425 Homeobox Transcription Factor family AT2G16400 48.81 5.27e-102 311.0
Mimi5g00728 . 66 254 Homeobox Transcription Factor family AT3G01470 43.367 9.60e-42 144.0
Mimi5g01118 . 1 307 Homeobox Transcription Factor family AT5G06710 45.455 7.34e-76 236.0
Mimi4g00156 . 1 274 Homeobox Transcription Factor family AT3G60390 58.304 1.33e-91 274.0
Mimi4g00475 WGDA 1 284 Homeobox Transcription Factor family AT4G16780 62.258 2.85e-109 317.0
Mimi4g01358 WGDA 161 670 Homeobox Transcription Factor family AT3G19510 45.857 2.44e-119 370.0
Mimi4g01362 . 161 670 Homeobox Transcription Factor family AT3G19510 46.435 9.42e-120 371.0
Mimi3g00162 . 3 142 Homeobox Transcription Factor family AT5G53980 43.478 3.31e-31 109.0
Mimi3g01673 . 76 271 Homeobox Transcription Factor family AT3G01470 49.289 1.29e-56 179.0
Mimi2g00048 . 1 324 Homeobox Transcription Factor family AT1G23380 55.301 5.04e-116 337.0
Mimi2g00073 ACH 14 290 Homeobox Transcription Factor family AT1G69780 50.0 2.44e-85 255.0
Mimi2g00678 . 47 148 Homeobox Transcription Factor family AT5G53980 40.0 5.90e-16 68.6
Mimi2g01218 . 3 219 Homeobox Transcription Factor family AT2G18550 53.846 1.43e-71 215.0
Mimi2g01253 . 3 216 Homeobox Transcription Factor family AT2G18550 54.63 5.25e-73 219.0
Mimi2g01350 ACH,WGDA 1 278 Homeobox Transcription Factor family AT4G37790 51.325 3.84e-82 247.0
Mimi2g01478 WGDA 1 1438 Homeobox Transcription Factor family AT1G28420 47.175 0.0 1133.0
Mimi2g01559 ACH 121 378 Homeobox Transcription Factor family AT1G62360 71.642 7.95e-118 344.0
Mimi1g00350 . 63 235 Homeobox Transcription Factor family AT5G03790 35.632 1.94e-16 71.6
Mimi1g00419 . 45 287 Homeobox Transcription Factor family AT4G40060 40.476 1.41e-44 151.0
Mimi1g00728 . 7 505 Homeobox Transcription Factor family AT4G03250 36.229 2.27e-70 233.0
Mimi1g00765 . 7 505 Homeobox Transcription Factor family AT4G03250 37.385 4.93e-70 234.0
Mimi1g01319 ACH 11 680 Homeobox Transcription Factor family AT2G35940 47.714 4.12e-157 467.0
Mimi1g01740 . 232 320 Homeobox Transcription Factor family AT2G23760 62.366 2.86e-23 99.4
Mimi1g01741 . 405 738 Homeobox Transcription Factor family AT4G36870 55.78 5.36e-114 344.0
Mimi1g01786 ACH 77 290 Homeobox Transcription Factor family AT1G69780 51.351 4.78e-64 200.0
Mimi1g01986 ACH,WGDA 15 294 Homeobox Transcription Factor family AT1G69780 60.256 3.02e-106 309.0
Mimi1g01996 WGDA 66 272 Homeobox Transcription Factor family AT3G01470 39.394 3.63e-41 142.0
Mimi1g02449 ACH 8 272 Homeobox Transcription Factor family AT4G37790 50.189 7.20e-70 223.0
Mimi1g02488 . 8 238 Homeobox Transcription Factor family AT4G37790 54.113 8.90e-67 214.0
Mimi1g02838 ACH 251 584 Homeobox Transcription Factor family AT2G27990 43.073 3.20e-88 285.0
Mimi1g02852 ACH 8 823 Homeobox Transcription Factor family AT5G60690 79.951 0.0 1364.0
Mimi1g02990 . 388 938 Homeobox Transcription Factor family AT5G44180 26.408 2.12e-44 174.0
Mimi1g03577 ACH 102 795 Homeobox Transcription Factor family AT4G00730 41.127 1.54e-174 516.0
Mimi1g03643 . 1 124 Homeobox Transcription Factor family AT2G46680 52.419 2.04e-38 131.0
Mimi1g03657 . 1 124 Homeobox Transcription Factor family AT2G46680 52.419 2.43e-38 131.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi Homeodomain 1.1e-15 CL0123 TF HB-HD-ZIP