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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi9g01347 ATGGGTCGGGTATTTCTGGTGGAGTTAGAGGGAAGAACATACAAATGCAAGTTCTGCAAAACAAATTTAGCTCTTGCCGAGAGTGTCGTCTCCCGGGGTTTCCATTGCCGCAGGGGAAAAGCTTACCTTTTCAACCAAGTGGTGAATGTGACAGCTGGACCCATTGAGGAAAGGATGATGTTATCGGGATTGCATACCGTTACAGATGTATATTGCGTATGCTGTGGACAAATTGTCGGCTGGAAATATGAGACTGCACATGAACAATCCCAGAAGTATAAAGAAGGCAAATTTGTTCTTGAAAGAGGAAGAATTATAGACGGGCTTGATTCGGAATTTTACATAGATACACGTCCGAGTTCAAGTGATGCTGAAGAAGCCTGA 384 43.75 MGRVFLVELEGRTYKCKFCKTNLALAESVVSRGFHCRRGKAYLFNQVVNVTAGPIEERMMLSGLHTVTDVYCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIIDGLDSEFYIDTRPSSSDAEEA 127
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi9g01347 127 Pfam Yippee zinc-binding-DNA-binding -Mis18, centromere assembly 14 105 IPR004910 -
Mimi9g01347 127 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Mimi9g01347 127 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi9g01347 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr12:25733201 Mimi9g01347 Mimi-Chr9:40453710 dispersed
Mimi Mimi-Chr6:67114820 Mimi9g01347 Mimi-Chr9:40453710 dispersed
Mimi Mimi-Chr8:3305489 Mimi9g01347 Mimi-Chr9:40453710 dispersed
Mimi Mimi-Chr8:41722056 Mimi9g01347 Mimi-Chr9:40453710 dispersed
Mimi Mimi-Chr9:40453710 Mimi13g00659 Mimi-Chr13:13608204 transposed