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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi9g01450 ATGGGGGAAATGACCTTGTTTTTAGGTCTTGAGGTAAAGAAAGATGAAAAGGGGGTGCTGAATCATCAGGGAAAGCATGTACAGAATCAACCTGCTGGTTCTTTTTCTGAAGTAGCAACGGAAGAATTTATCCTGGAAGTGGGAGAACTGCTGAAACTATATGAAACCCTGGCAAGGGTTTATGTACAAAGAACGGGCAAGCCCTTGTGGGTTGTATCCGAAGACATGGAAAAAGATGTTTTTATGTCATCAACAGAGGCCCAAGCTCATGGAATTGTTGATCTTGTAGCAATTGAATGA 300 42.0 MGEMTLFLGLEVKKDEKGVLNHQGKHVQNQPAGSFSEVATEEFILEVGELLKLYETLARVYVQRTGKPLWVVSEDMEKDVFMSSTEAQAHGIVDLVAIE 99
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi9g01450 99 Gene3D - 12 97 - -
Mimi9g01450 99 Pfam Clp protease 26 97 IPR023562 -
Mimi9g01450 99 SUPERFAMILY ClpP-crotonase 39 96 IPR029045 -
Mimi9g01450 99 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 17 97 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi9g01450 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr9:49485734 Mimi12g01939 Mimi-Chr12:84668487 dispersed
Mimi Mimi-Chr13:8255219 Mimi9g01450 Mimi-Chr9:49485734 transposed
Mimi Mimi-Chr1:116678448 Mimi9g01450 Mimi-Chr9:49485734 transposed
Mimi Mimi-Chr5:76390964 Mimi9g01450 Mimi-Chr9:49485734 transposed
Mimi Mimi-Chr5:34789755 Mimi9g01450 Mimi-Chr9:49485734 wgd
Mimi Mimi-Chr6:29449117 Mimi9g01450 Mimi-Chr9:49485734 wgd