AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi9g01537 ATGCATATCACCGGACCTCACTCTTCGGCTCTTCTCCGACGAGCTTCTAGGTCTACCTCCACCAGGCTTCACTCTTCTCTGCCAAATAAACCTACTCCGCCAGCTTCATCACAGTTATCTTCGCCGGCGGCGTCTCAGTTCCGATCTCATACAGCCGCATCGGCCGCTTTCCGCTCCGTCCGCTCACGATGGAGCCATGGTGTTGATTGGAAGTCTCCGGCTTCGCTGTCTTCGCAGATCAGGACTGCTGCTTCTCCTGTTCTTGACCGTTTTCATCGCACTCTCGCTACTATTGCATCTGAAAATGCTTTCAGTGGGATCTTGACTGGTCTCCCCAAGCCTGGAGGTGGGGAATTTGGGAAGTTCTATAGTCTGCCATCTCTGAATGATCCAAGAATAGACAAGCTGCCATATTCAATTAGGATACTTTTGGAATCAGCTATCCGCAATTGTGACAATTTCCAAGTCACTAAAGAAGATGTTGAGAAAATTATTGATTGGGAGAAGACTGCTCCAAAGCAAGTCGAGATTCCCTTCAAGCCAGCCCGTGTCCTGTTGCAAGATTTTACTGGTGTGCCAGCTGTGGTAGACCTTGCATGTATGCGTGATGCCATAAACAACCTTGGCGGGGACTCTGACAAAATCAATCCTTTGGTTCCAGTGGATCTTGTGGTTGATCATTCCGTTCAAGTTGATGTTACTAGGTCTGAAAATGCAGTAAAAGCAAATATGGAACTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTCCTAAAGTGGGGATCCAAAGCTTTCCAAAACATGCTTGTGGTTCCACCAGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGACGCGTTGTTTTCAACACTGATGGAATGCTGTACCCTGATAGTGTTGTTGGAACAGACTCCCACACTACTATGATCGACGGGTTAGGTGTTGCTGGTTGGGGAGTTGGTGGAATTGAAGCAGAGGCTGCAATGCTTGGGCAGCCAATGAGCATGGTTTTGCCTGGTGTTGTTGGGTTCAAGTTATCAGGGAAATTACGTGATGGTGTAACAGCTACTGATTTGGTTTTAACTGTTACCCAAATGTTAAGAAAGCATGGTGTTGTTGGCAAATTTGTTGAATTCCATGGTGATGGTGTGGGTAAAATATCACTTGCTGACAGGGCTACAATTGCCAACATGTCGCCTGAGTATGGTGCAACAATGGGCTTTTTTCCAGTGGATCATGTTACTCTTCAGTATCTCAAGTTAACTGGACGAAGTGATGATACAGTTGCTATGATAGAGGCATACTTACGTGCAAACAATATGTTTGTCGACTATAATGAACCTCAACAAGATAGAGTCTACACATCTTATTTGGAGCTAAACCTTTCAGAAGTGGAACCCTGTATTTCAGGGCCAAAGAGACCTCATGACCGAGTTCCTTTGAAGGAAATGAAGGCAGATTGGCAATCTTGTCTTGATAATAAAGTGGGATTCAAGGGATTTGAGGTACCAAAAGAGGCACAAGACAAAATTGCCAAATTTAATTTTCATGGACAGCAGGCAGAACTTAAGCATGGCAGTGTTGTGATTGCTGCTATCACAAGCTGCACAAATACATCAAACCCCAGTGTTATGCTTGGGGCTGGACTTGTTGCCAAAAAGGCTTGTGAACTCGGTTTACAGGTTAAACCATGGGTTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACAAAATATTTGCTTCAAAGTGGGTTGCAGAAGTATTTAAATGAACAAGGGTTCAACATTGTTGGGTATGGATGCACAACATGTATTGGAAATTCAGGCGACTTGGATGAATCGGTTGCTTCTGCTATTGCTGATAATGATATTATTGCATCTGCCGTTCTCTCTGGGAACCGAAACTTTGAGGGACGTGTTCATGCTTTGACAAGAGCAAACTATCTTGCATCGCCTCCTTTGGTTGTTGCTTATGCCCTTGCTGGCACTGTCAATATTGATTTTGAGAAGGAACCGCTTGGAGTTGGAAAAGATGGAAAAAATGTTTATTTCAGGGATATCTGGCCAAGTAGTGAGGAAATTGCGGAGGCTGTTCAATCAAGTGTTCTACCTGAAATGTTTAAGAGTACATATAAATCTGTTACCGAGGGAAATCCAATGTGGAATGACCTAACTGTCCCAGAATCCAAACTATACTCTTGGGATCCAAATTCCACCTACATTCACAAACCGCCATATTTCGAAAACATGACAATGGACCCCCCTGGGGCCCATGGTGTGAAGGAGGCCTATTGCTTACTCAACTTTGGTGACAGTATCACAACAGATCACATTTCACCTGCAGGAAGCATTCACAAAGCCAGCCCGGCTGCCAAGTTTCTCCTCGACCGTGGTGTTGACCACAAAGACTTTAATTCTTATGGCAGTAGAAGAGGTAATGATGAAATTATGGCCAGGGGCACTTTTGCCAACATACGCATTGTTAACAAGCTATTGGAAGGAGAAGTCGGCCCGAAGACGGTTCATATTCCAACGGGGGAGAAGCTCTCGGTTTTCGATGCAGCAGCGAGGTACAAGGCTGCTGGTCAGGATACAATTGTTTTGGCTGGTGCAGAGTATGGAAGTGGAAGCTCTAGGGATTGGGCTGCTAAGGGTCCCATGTTATTAGGGGTTAAAGCAGTAATTGCAAAAAGTTTTGAGAGGATCCATAGAAGCAACTTGGTAGGAATGGGTATTATACCTCTCTGCTTCAAAGCCGGTGAAGATGCTGACACACTACAGTTGACTGGTCATGAACGCTACACCATTGACTTACCAAACAATATTAATGAGATCCGGCCTGGTCAAGATGTCAATGTCAAAACTAGTAGCGGGAAATCATTCACTTGTACAGTCCGTTTTGACACTGAGGATGGGAATGGGAAAGGGCACAAAACTCAATTTTATGTGAATCAATCCATTTCATGA 2976 44.49 MHITGPHSSALLRRASRSTSTRLHSSLPNKPTPPASSQLSSPAASQFRSHTAASAAFRSVRSRWSHGVDWKSPASLSSQIRTAASPVLDRFHRTLATIASENAFSGILTGLPKPGGGEFGKFYSLPSLNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAINNLGGDSDKINPLVPVDLVVDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQDRVYTSYLELNLSEVEPCISGPKRPHDRVPLKEMKADWQSCLDNKVGFKGFEVPKEAQDKIAKFNFHGQQAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGDLDESVASAIADNDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVNIDFEKEPLGVGKDGKNVYFRDIWPSSEEIAEAVQSSVLPEMFKSTYKSVTEGNPMWNDLTVPESKLYSWDPNSTYIHKPPYFENMTMDPPGAHGVKEAYCLLNFGDSITTDHISPAGSIHKASPAAKFLLDRGVDHKDFNSYGSRRGNDEIMARGTFANIRIVNKLLEGEVGPKTVHIPTGEKLSVFDAAARYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPNNINEIRPGQDVNVKTSSGKSFTCTVRFDTEDGNGKGHKTQFYVNQSIS 991
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi9g01537 991 ProSitePatterns Aconitase family signature 2. 596 609 IPR018136 -
Mimi9g01537 991 MobiDBLite consensus disorder prediction 11 45 - -
Mimi9g01537 991 Pfam Aconitase C-terminal domain 794 922 IPR000573 -
Mimi9g01537 991 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 100 973 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Mimi9g01537 991 ProSitePatterns Aconitase family signature 1. 530 546 IPR018136 -
Mimi9g01537 991 Gene3D - 694 755 - -
Mimi9g01537 991 CDD AcnA-IRP-Swivel 771 941 IPR044137 -
Mimi9g01537 991 SUPERFAMILY LeuD-IlvD-like 734 974 - -
Mimi9g01537 991 PRINTS Aconitase family signature 297 310 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 311 326 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 244 257 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 373 386 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 387 400 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 534 545 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 596 609 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 268 276 IPR001030 -
Mimi9g01537 991 PRINTS Aconitase family signature 469 483 IPR001030 -
Mimi9g01537 991 SUPERFAMILY Aconitase iron-sulfur domain 116 730 IPR036008 -
Mimi9g01537 991 Gene3D Aconitase, domain 4 758 977 IPR015928 -
Mimi9g01537 991 CDD AcnA-IRP 183 667 - -
Mimi9g01537 991 FunFam Aconitate hydratase 757 990 - -
Mimi9g01537 991 NCBIfam aconitate hydratase AcnA 120 973 IPR006249 -
Mimi9g01537 991 FunFam Aconitate hydratase 102 469 - -
Mimi9g01537 991 MobiDBLite consensus disorder prediction 1 45 - -
Mimi9g01537 991 FunFam cytoplasmic aconitate hydratase 470 693 - -
Mimi9g01537 991 Gene3D Aconitase, domain 3 103 469 IPR015931 -
Mimi9g01537 991 Gene3D Aconitase, domain 3 470 693 IPR015931 -
Mimi9g01537 991 Pfam Aconitase family (aconitate hydratase) 162 665 IPR001030 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi9g01537 K01681 aconitate hydratase [EC:4.2.1.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr14:22640632 Mimi9g01537 Mimi-Chr9:56051803 dispersed