AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi9g01549 ATGTGGGCCTTCAAAATTACGGCGGAAGAAGCTAAAGTCACTTCAGACGTGGTGACAGGTATTTTTCATATTAATTCCTTGCCTGCTTATATATTATTTGATTCTGGAGCTAGTCGCTCTTTTATATCTGTGAAGTTTGTGAATCATGATTCGTTTGTGCTAGCTAAGCTACCTTATCCATTAGAGGTAGAAATAGCTGACTCTAAGAGTTTCTTAGTGTATGGCATCTATCATAGATGTAAACTCACCATTGATGGTGAGGATTATGAGGTTGATTTGATTCCAATGATCTTGGGAGAATTTGATGTTGTGATTGGGATGGATTGGTTGTCTAAATATGGAGCTAACATTGTATGTAACCGCAAGGTTATTCAATTAACATCTCCAGGTGGTTATGAAGTATGTATTCAGGGAGAGAAACGAGGTGGAACCATATTATGTTCTTTAGCTAAAGCTATGAATTACATGAACCATGGGGGTCAGTCATTCTTAGCTTATGTTCTTGATGTAGAAAAGGAGATAAAGGAACTTAATGATGTTCCAGTGGTCAGGGATTTCCCTGATGTATTTCCGGATGATTTACCGGGAATTCCTTGTGATAGAGATGTTGAGTTTAAGATTGGTATTATTCCTGGGGCTAAGCCCATAGCTAAAGCTCCATATCGGTTGGCACCATCTGAAATGAAAGAATTAATGACACAGTTTCAAGATCTTTTAGATAAAGGCTTTATCCATCCGAGCATCTCCCCGTGGGGTGCACCAATTCTTTTTGTTAAAAAGAAAGACGGAAGCCTTAGAATGTGTATTGATTATAGGGAGTTGAATAAAGTGACTGTGAAAAATCGATATCCTCTACCTCGAATTGATGACCTTTTTGATCAGTTGCAAGGAGCGTCGTGGTTTTCTAAAATTGATCTTCGCTCGGGTTATCATCAACTCAAGGTTAAAGAGGAAGATATTCCCAAGACTACTTTCCGTACTCGTTACGGTCATTATGAATTTCTTGTGATGTCGTTTGGGTTGACAAATGCACCGGCCGCGTTCATGGATTTGATGAACCGGTTTTTGGGACATGTGGTGGGTGCTGATGGCATACTTGTTGATCCTTCGAAAGTTCAAGCGGTGATGAAATGGAGTCCTCCTAAAACTCCAACTGAAATTAGAAGTTTTCTTGGTCTAGCTGGTTACTATCGGCGGTTTATACAGGATTTTGCAAGAATTGCATCTCCTTTGACTAAACTAACAAGAAAAGATGTGAAATTTGTTTGGGGTGATGACCAAGAAAAAGCTTTTAATGAACTTAAGTTCAAGTTAACTCAGACACCGGTATTAACTCTACCGGATGGACCTGATAATTTTGTGGTATACTCTGATGCATCTTATCTTGGGCTTGGTTGTGTCCTTATGCAAAGAGGTAAGGTGATTGCCTATGCGTCGAGGCAACTGAAAGTTCATGAAGTAAACTATCCTACTCATGATCTAGAATTGGCAGCGGTAGTGTTTGCCTTAAAAATTTGGAGGCATTACTTGTATGGTGTGAAATGTACAATTTACACCGATCACAAGAGCCTGAAATATTTCTTCACACAGAAGGAATTAAATATGAGGCAAAGACGTTGGATAGAACTACTCAAGGATTATGATTGTGAAATCCTTTATCATCCGGGAAAAGCCAATGTGGTGGCGGATGCCTTAAGTAGAAAGGAAGAACATGAACTTATTAGGGTTACAGCAATGAAGATTGTGATTTCCTCTGATTTGGTGGATCAAATTAAAGAAGCTCAAATTGAAGCTTTAAAAGAAGAAAACTGGAAACGAGATCGAATAAAGGGGCAAGCTCATAATCTGGATGAAGATAGTCGTGGGTTAAAGACAAGATGGGGTAGGGTGTGGATACCTCCCACTTGTTCTTTGAAAATTGATCTGATGGAGGAAGCTCATAAATCAAAATACTCAATTCATCTAGGAGCCACTAAAATGTATCGAGACCTTCGGGCTGAGCATCAAAAGCCTTATGGCAAATTACAGCCTTTAGAGATTCCTATGTGGAAATGGGAACACATCACAATGGACCTAATTACTAAACTCCGGAAAACCCGAAAGGGGTATGATACGATTTGGGTCATTGTGGATCGGTTGACTAAAAGTGCTCATTTTATTCCTATTCGTGAATCGTATTCTTCCGAGAAAATGGCTGAAGTGTATGTGAAAGAAATAGTGCCGCGTCACGGGATACCAGTGACGATTGTGTCCGATCGAGACACACGATTCACTTCTCATTTCTGGAAGAATTTTCAAGAGGAATTGGGTACTAAACTGTTGTTGAGCACGGCGTATCATCCTCAGACTGATGGTCAGAGTGAACGAACCATTCAGACGCTGGAGGATATGCTACGAGCGTGTATCATTGATTTTGGAGGCAGTTGGGATGACTATCTACCTCTGGCGGAATTTTCATATAACAACAGTTATCATTCGGGGTTGGGAATGCCTTCATATGAAATGTTGTATGGAAGACGATGTCGTACTCCCGTTTGCTGGGGAGAGGTTGGCCCGCGAGAGCTCGAAAATAAAGAAATACTGAAAGTTACAAATCAACGAATTGATCAAATTCGAGCTCACTTGAAAGCGGCACAAAACCGTCAAAAGTCATATGCAGATAAACGAAGACGACCAATTGAATTTCAAGTGGGAGACTTTGTGTTAATTACAGCTCGGATAGGTAATGTTGCTTATCGCCTTGAGCTACCAGAGGAATTGAGTGGTATACATGATACTTTTCACGTATCATATCTGAGAAAATGTTTGGCGGATGAATCGACTTATGTTCCATTTGAAGATTTGGAAATTGATGATAAATTAAATTATATTGAAAAGCCAGTCGCGATTTTAGATCGAAAAGTCAAACAACTCAGAAACAAGTCCTTGAACCAGGTGAAGGTTCAATGGAAAAACAGGAGGGGATCTGACACAACATGGGATTCAGAAGACGAGATGAGGAAATTTTATCCTTTTCTTTTTGATCGAAACAAAGAAAATTTCAAAAATAATGTGGTTTGGGATTCGTCGCGGTACGCGGCAATGATTTTGAGGATTCCTTCGCGTAAGCCTCAGATAACCAGAAATGTTGAGGCGTATAAGGATGCTTTGGAGGGATTGAATTCGATTATCGGATATGCTATTAAAGCCAATAATAATTTCATGATTTTGCAACATTTGAGGAGTTTGGGTTGTGGGGCTGTTTTGGTTAGTGGGAATGAACTCAGATTGGCCCTGCGTGCTGGTTTTGATCCTACCAGGTGTATTTTTAATGGAAATGGAAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTTTTTGTTAACATTGACAGTGAATTTGATTTGGATAACATTGTATCCGCAGCAAGAATTGCTGGAAAAAAGGTTAATGTTTTGCTTCGAATCAATCCGGACGTTGATCCTCAGGTCCATCCTTATGTTGCAACCGGGAACAAAAACTCCAAATTTGGTATAAGAAATGAGAAATTGCAATGGTTTTTAGATTCAGTGAAGTCATATCCTGATGAACTTAAGCTGGTTGGGGCCCATTGCCATCTTGGATCTACCATAACCAAGGTTGACATTTTCAGAGATGCTGCAGCAATTATGGTGAAGTTCATTGACGAAATTCGATCCCAAGGGTTCAATATTAGTCATTTGAACATTGGAGGTGGTCTCGGGATTGATTACTATCACACTGGTACTGTCCTTCCTACACCAAGAGATCTTATTGACACAGTGCGGGAGCTAGTGAAGTCTCGAGATCTTAATTTAATTATTGAACCTGGAAGATCACTGATTGCTAACACCTGCTGTTTTGTTAATCGTGTGACCGGTGTAAAAACAAATGGTACAAAAAACTTTATTGTGATTGATGGAAGCATGGCAGAACTAATTCGTCCTAGCCTATATGATGCTTATCAACATATAGAGCTGGTTTCTCCTCCTCCATCTGATTCTGCTGTTTCAACTTTTGATGTTGTGGGCCCAGTTTGCGAGTCGGCTGATTTTTTGGGGAAAAATAGGGAACTTCCAGCACCAGCCAGGGGTTCTGGGCTTGTAGTTCATGATGCAGGAGCCTACTGCATGAGTATGGCTTCAACTTACAACCTCAAAATGCGCCCACCTGAATACTGGGTTGAAGAAGATGGATCGGTAGCCAAAATCAGGCATGGGGAGACATTTGAAGATCATATGAGATACTTTGAAGGGCTTTCAATCTAA 4272 40.24 MWAFKITAEEAKVTSDVVTGIFHINSLPAYILFDSGASRSFISVKFVNHDSFVLAKLPYPLEVEIADSKSFLVYGIYHRCKLTIDGEDYEVDLIPMILGEFDVVIGMDWLSKYGANIVCNRKVIQLTSPGGYEVCIQGEKRGGTILCSLAKAMNYMNHGGQSFLAYVLDVEKEIKELNDVPVVRDFPDVFPDDLPGIPCDRDVEFKIGIIPGAKPIAKAPYRLAPSEMKELMTQFQDLLDKGFIHPSISPWGAPILFVKKKDGSLRMCIDYRELNKVTVKNRYPLPRIDDLFDQLQGASWFSKIDLRSGYHQLKVKEEDIPKTTFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRFLGHVVGADGILVDPSKVQAVMKWSPPKTPTEIRSFLGLAGYYRRFIQDFARIASPLTKLTRKDVKFVWGDDQEKAFNELKFKLTQTPVLTLPDGPDNFVVYSDASYLGLGCVLMQRGKVIAYASRQLKVHEVNYPTHDLELAAVVFALKIWRHYLYGVKCTIYTDHKSLKYFFTQKELNMRQRRWIELLKDYDCEILYHPGKANVVADALSRKEEHELIRVTAMKIVISSDLVDQIKEAQIEALKEENWKRDRIKGQAHNLDEDSRGLKTRWGRVWIPPTCSLKIDLMEEAHKSKYSIHLGATKMYRDLRAEHQKPYGKLQPLEIPMWKWEHITMDLITKLRKTRKGYDTIWVIVDRLTKSAHFIPIRESYSSEKMAEVYVKEIVPRHGIPVTIVSDRDTRFTSHFWKNFQEELGTKLLLSTAYHPQTDGQSERTIQTLEDMLRACIIDFGGSWDDYLPLAEFSYNNSYHSGLGMPSYEMLYGRRCRTPVCWGEVGPRELENKEILKVTNQRIDQIRAHLKAAQNRQKSYADKRRRPIEFQVGDFVLITARIGNVAYRLELPEELSGIHDTFHVSYLRKCLADESTYVPFEDLEIDDKLNYIEKPVAILDRKVKQLRNKSLNQVKVQWKNRRGSDTTWDSEDEMRKFYPFLFDRNKENFKNNVVWDSSRYAAMILRIPSRKPQITRNVEAYKDALEGLNSIIGYAIKANNNFMILQHLRSLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDSVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRSQGFNISHLNIGGGLGIDYYHTGTVLPTPRDLIDTVRELVKSRDLNLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPSDSAVSTFDVVGPVCESADFLGKNRELPAPARGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVAKIRHGETFEDHMRYFEGLSI 1423
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi9g01549 1423 ProSiteProfiles Integrase catalytic domain profile. 677 840 IPR001584 GO:0015074(InterPro)
Mimi9g01549 1423 CDD retropepsin-like 22 110 - -
Mimi9g01549 1423 Gene3D Acid Proteases 21 133 IPR021109 -
Mimi9g01549 1423 CDD RT-LTR 242 367 - -
Mimi9g01549 1423 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 1228 1243 IPR022657 -
Mimi9g01549 1423 PRINTS Diaminopimelate decarboxylase signature 1302 1320 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Mimi9g01549 1423 PRINTS Diaminopimelate decarboxylase signature 1385 1407 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Mimi9g01549 1423 PRINTS Diaminopimelate decarboxylase signature 1165 1174 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Mimi9g01549 1423 PRINTS Diaminopimelate decarboxylase signature 1077 1094 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Mimi9g01549 1423 Gene3D Alanine racemase 1037 1281 IPR029066 -
Mimi9g01549 1423 SUPERFAMILY PLP-binding barrel 1037 1285 IPR029066 -
Mimi9g01549 1423 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like protein 452 518 - -
Mimi9g01549 1423 Pfam RNase H-like domain found in reverse transcriptase 451 547 IPR041373 -
Mimi9g01549 1423 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 31 42 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Mimi9g01549 1423 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 1285 1375 IPR022643 GO:0003824(InterPro)
Mimi9g01549 1423 SUPERFAMILY Alanine racemase C-terminal domain-like 1260 1416 IPR009006 GO:0003824(InterPro)
Mimi9g01549 1423 Coils Coil 861 881 - -
Mimi9g01549 1423 PANTHER YALI0A06105P 151 974 - -
Mimi9g01549 1423 CDD PLPDE-III-DapDC 1036 1396 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Mimi9g01549 1423 CDD RNase-HI-RT-Ty3 454 568 - -
Mimi9g01549 1423 FunFam Diaminopimelate decarboxylase 1036 1281 - -
Mimi9g01549 1423 Pfam Retroviral aspartyl protease 4 127 - -
Mimi9g01549 1423 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 258 359 IPR000477 -
Mimi9g01549 1423 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 1059 1077 IPR022653 -
Mimi9g01549 1423 Gene3D - 373 457 IPR043128 -
Mimi9g01549 1423 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 1282 1415 IPR009006 GO:0003824(InterPro)
Mimi9g01549 1423 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 1274 1293 IPR000183 GO:0003824(InterPro)
Mimi9g01549 1423 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 1192 1205 IPR000183 GO:0003824(InterPro)
Mimi9g01549 1423 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 1375 1388 IPR000183 GO:0003824(InterPro)
Mimi9g01549 1423 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 1059 1077 IPR000183 GO:0003824(InterPro)
Mimi9g01549 1423 FunFam Transposon Tf2-6 polyprotein-like Protein 370 459 - -
Mimi9g01549 1423 FunFam Diaminopimelate decarboxylase 1263 1415 - -
Mimi9g01549 1423 FunFam Retrovirus-related Pol polyprotein from transposon 297-like Protein 677 881 - -
Mimi9g01549 1423 SUPERFAMILY Chromo domain-like 922 1015 IPR016197 -
Mimi9g01549 1423 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 1038 1284 IPR022644 GO:0003824(InterPro)
Mimi9g01549 1423 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 203 343 - -
Mimi9g01549 1423 Gene3D - 283 358 IPR043128 -
Mimi9g01549 1423 Gene3D - 674 881 IPR036397 GO:0003676(InterPro)
Mimi9g01549 1423 NCBIfam diaminopimelate decarboxylase 1038 1416 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Mimi9g01549 1423 Hamap Diaminopimelate decarboxylase [lysA]. 1026 1419 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Mimi9g01549 1423 SUPERFAMILY Ribonuclease H-like 678 834 IPR012337 -
Mimi9g01549 1423 SUPERFAMILY Acid proteases 14 118 IPR021109 -
Mimi9g01549 1423 SUPERFAMILY DNA-RNA polymerases 182 553 IPR043502 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi9g01549 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr13:81588778 Mimi9g01549 Mimi-Chr9:56614504 dispersed
Mimi Mimi-Chr6:67402937 Mimi9g01549 Mimi-Chr9:56614504 dispersed
Mimi Mimi-Chr9:56614504 Mimi6g00068 Mimi-Chr6:1804104 dispersed
Mimi Mimi-Chr12:106240112 Mimi9g01549 Mimi-Chr9:56614504 wgd
Mimi Mimi-Chr18:46309610 Mimi9g01549 Mimi-Chr9:56614504 wgd
Mimi Mimi-Chr2:32586918 Mimi9g01549 Mimi-Chr9:56614504 wgd
Mimi Mimi-Chr4:29245413 Mimi9g01549 Mimi-Chr9:56614504 wgd