AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi9g01567 ATGTTTGAAGAGAAAAATTCTTGTGGAAACGATGAAAATCTTGATCAGGATGAAGTAGAAAAGAAGTATTTGCATGATTATTTTGAAACATTGGAAGGAACTTTAGGTATTAGAGATGACACTAATGAGAAAATAAATGATGTTGATGATTGGGATTTTGCTCCGATTGTTATTGATTCATTGGAAACTTGTTATCACGTTCTAGATATGCTAGACACCCCACTTTATGTTTTGAAATACAAAGAACCACTTAAAAAACAATTCCTTGAAGTTATTATTTGGTTCTTTAACCAAATTGGACAACCGGATGGAAAGAAATATCCTCCTATGTTCTCAAATGGAGTGGAAGTTGAGTTGTTTGATCTCCATTTATTTGTGAAAGCGGCCGGTGGCTATGAGAATCTTGACAATAATAAGTGGGATGAAATCGGTAGCCACTTGGGAATATCCGGTCCATATGGTGTTTACCTAAAACCGATTTATGTTGGTTATTTGGAACTTCTATTGTTCTTTTATAACAGATCGGTTTCAATGGACGAAAAGTTGTTGCAGAGGCTGGAGTCCGCCGTAACGCGGTTGGAATCGCTCTCCGGCGGTTTCCAGCCCCATTCCGTCGCACCGGACGCCGCATCGGAACCGTCAATCGGCGCGTTTGATGATCTGATCGCGGAATACGTCGGAAAGGTTTCCACTGCGGCGGAGAAGATCGGCGGACAAGTTAAGGATGTGACGAATCTTCTCAAGGAGGCTTTTCTCGTTCAGAAGGAGTTAATCCTTAAGACAAAACAAACTCAGAAACCTGATGCAGAAGGAATGGTAGAATTTCTCAGGCCATTGAATGAAAAATTAACTGAAGCAACTTGCATGACCACTGGACGGCGTTCAGATTTCCCAAATCACTTAAAATCTACAGCTGAGAGTCTAATAGCTTTAGCATGGATTGCATATACAGGGAGAGATTGTGGAATGAGCATGCCTATTGGACATGTGGAAGAATGCTGGCAGTCAGCTGAGTTTTACAACAACAAGGTTCTTGTAGAATACAAAAATAAAGACTCAAATCATGTGGAATGGGCAAAAGCTTTGAAGGAACTTTATGTACCAGGGTTAAGGGATTATGTTAAGAGTCATCATCCGTTGGGACCTGTATGGAGTGCAACTGGGGTAATTATCTCCGCTTCATCTAAATCTTACAAACCAGGTGCTCCTGCTGCTCCAAATCCCCCACCTGCTTCACTTCCCAGCTCAGCATCATCTTCATCCGGCTCGAAACAAGGAATGGCTGCAGTTTTTCAAGAAATTAATTCAAAACCTGTTACTGCTGGATTAAGAAAAGTTACAAATGATATGAAGACCAAAAACCGAACAGATAGAGCAGGGCTTGTGAGTTTTGGTGGAAAAGAAATAAGCAAGAGTGTGCCATCTGTTGCTAAAGTTGGACCTCCAAAGTTTGAACTTGTAACAGGTCGCAAATGGATTGTTGAGTATCAAATTGGCAAGAAGGATTTGTCTATTGATGAGTGTGATCCAAGGCAGACAGTTTATATTTTTGGATGCAAAGATTCCATCCTCCAGATCAAAGGAAAAGTGAACAATATAACCGTTGACAAATGCACAAAAATGGGCGTTGTATTTACGGATGTTGTTGCTGCGTTTGAAATTGTTAATTGCAGCAGTATAGAGGTGCAATGCCAGGGTGCGGCCCCGACGATATCAATAGACAACACAGCAGGTTGCCAGCTGTACTTGAGTAAAGATTCTCTAGAATCTTCTATCACAACTTCTAAGGCAACTGAAGTTAATGTGATGGTACCCTCCCAAGATCCCAATGCTGATCTGGAGGAACATGCTTTGCCACATCAGTACATTCACGCTTACCAGGATAACCATTTTGTTACAACCCCTGTCTCACACTCTGGAGGGGAGTCAGCACCAAAAACCAATTTGGATATGGAGAGTAAAACAAGGTCTTTGACAGTTAATAATGCACACAACACCAATTCAGATACAGAGACTAAAACCAACTGTTTGGCAACTAATAATGCACATTCGCGTATGGAGAGTAAAACCACTATTTATGCACAGAAAACCGATTCGCGCATAACCAATTGTTTGACGACTGATTTAAGGTTATACTACATGGCTGCAGTATTATGCGTCTTTTTCGCTATGGTTGTCGCCTCTATGCTATCATCTTGA 2199 41.06 MFEEKNSCGNDENLDQDEVEKKYLHDYFETLEGTLGIRDDTNEKINDVDDWDFAPIVIDSLETCYHVLDMLDTPLYVLKYKEPLKKQFLEVIIWFFNQIGQPDGKKYPPMFSNGVEVELFDLHLFVKAAGGYENLDNNKWDEIGSHLGISGPYGVYLKPIYVGYLELLLFFYNRSVSMDEKLLQRLESAVTRLESLSGGFQPHSVAPDAASEPSIGAFDDLIAEYVGKVSTAAEKIGGQVKDVTNLLKEAFLVQKELILKTKQTQKPDAEGMVEFLRPLNEKLTEATCMTTGRRSDFPNHLKSTAESLIALAWIAYTGRDCGMSMPIGHVEECWQSAEFYNNKVLVEYKNKDSNHVEWAKALKELYVPGLRDYVKSHHPLGPVWSATGVIISASSKSYKPGAPAAPNPPPASLPSSASSSSGSKQGMAAVFQEINSKPVTAGLRKVTNDMKTKNRTDRAGLVSFGGKEISKSVPSVAKVGPPKFELVTGRKWIVEYQIGKKDLSIDECDPRQTVYIFGCKDSILQIKGKVNNITVDKCTKMGVVFTDVVAAFEIVNCSSIEVQCQGAAPTISIDNTAGCQLYLSKDSLESSITTSKATEVNVMVPSQDPNADLEEHALPHQYIHAYQDNHFVTTPVSHSGGESAPKTNLDMESKTRSLTVNNAHNTNSDTETKTNCLATNNAHSRMESKTTIYAQKTDSRITNCLTTDLRLYYMAAVLCVFFAMVVASMLSS 732
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi9g01567 732 SMART bright-3 83 171 IPR001606 GO:0003677(InterPro)
Mimi9g01567 732 ProSiteProfiles ARID domain profile. 82 173 IPR001606 GO:0003677(InterPro)
Mimi9g01567 732 SMART carp 557 594 IPR006599 -
Mimi9g01567 732 SMART carp 519 556 IPR006599 -
Mimi9g01567 732 Pfam Adenylate cyclase associated (CAP) C terminal 481 638 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
Mimi9g01567 732 SUPERFAMILY ARID-like 85 166 IPR036431 GO:0003677(InterPro)
Mimi9g01567 732 Gene3D - 480 640 IPR016098 -
Mimi9g01567 732 Gene3D - 75 184 IPR036431 GO:0003677(InterPro)
Mimi9g01567 732 ProSiteProfiles C-CAP-cofactor C-like domain profile. 481 618 IPR017901 -
Mimi9g01567 732 ProSitePatterns CAP protein signature 1. 182 194 IPR018106 -
Mimi9g01567 732 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 176 639 IPR001837 GO:0003779(PANTHER)|GO:0003779(InterPro)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
Mimi9g01567 732 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 215 409 IPR036222 -
Mimi9g01567 732 Pfam CAP N-terminal conserved motif 180 211 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
Mimi9g01567 732 Gene3D - 214 389 IPR036222 -
Mimi9g01567 732 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 481 640 IPR036223 -
Mimi9g01567 732 Pfam ARID-BRIGHT DNA binding domain 85 165 IPR001606 GO:0003677(InterPro)
Mimi9g01567 732 MobiDBLite consensus disorder prediction 398 424 - -
Mimi9g01567 732 FunFam Adenylyl cyclase-associated protein 214 389 - -
Mimi9g01567 732 Pfam CAP, N-terminal domain 218 381 IPR053950 -
Mimi9g01567 732 FunFam Adenylyl cyclase-associated protein 480 640 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi9g01567 K17261 adenylyl cyclase-associated protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:23307257 Mimi9g01567 Mimi-Chr9:58062984 dispersed
Mimi Mimi-Chr18:72655584 Mimi9g01567 Mimi-Chr9:58062984 dispersed
Mimi Mimi-Chr19:73656623 Mimi9g01567 Mimi-Chr9:58062984 dispersed
Mimi Mimi-Chr19:75286700 Mimi9g01567 Mimi-Chr9:58062984 dispersed
Mimi Mimi-Chr1:97905380 Mimi9g01567 Mimi-Chr9:58062984 dispersed
Mimi Mimi-Chr9:52592685 Mimi9g01567 Mimi-Chr9:58062984 dispersed
Mimi Mimi-Chr9:58062984 Mimi17g00181 Mimi-Chr17:5020436 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi CAP_C 4.5e-57 CL0391 TR ARID