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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi9g01607 ATGGTAGCGGTCGCTACAGCGCGCTACATAGCGTATCGTAGAGCTACTGCTATCTGTGGTCAGCGATTGAAAAGTGGAAGGCGAGGACCGAAGAAGGCGACTGTTCAAATCGAAGTAGAGGAGCAAGACGATAGCAACGGTTCAGACCGAAGACGAGGGCAAAGATCGACGGGGGAGGCGGCTGCGAAGCCTGCCTTGGGCGATTCAGATCGGCGACGACGGAGGGTGGCTGCGATTCAGAAGACGGCTGAGACGATCAACGATGGGTGGCTAAGAAGAACAGTCGGAGAAGTGAGCTATGAACATCCATCTAAAACAATAGCAAGCTATGAACCAAAATCAGCTAATTTGGCTCAAACCCCTGATTCAAAGGCCAAGTCTGCAGCTATTGAGAGAGCCAATGAGGTTCAAGCAAGCCTGCCATTTGAATCACCAAGCTTTGTTAAACCTATGCTCCCATCACATGTTACTGGTTGCTTTTGGCTTGGGCTTCCCAAGAAATTCTGTCTTGCACATTTGCCAAAACATGATGAAACAGTTGTGTTACTGAGCGAAAATGGGCGAGAATTTAACACTAAATTTCTTGTCGATAAAACTGGATTAAGCGGTGGCTGGAGAGGGTTTTCAGTTGCTCATAAACTGATTGAAGGAGATGCTCTAGTTTTTCATTTGATTGATCAATGGAAATTTAAGGTCTACATTATAAGGGTTAATGGTGCAAATGAAATTGATGGAGCTCTTGCACTTCTAAACTTAGTTCCTTGTGACACCAATATCTATCAACAACAATTCAAAAATGGCTCAAAAATTCTTCAAAAAGTTGACAATATGGATATTGATTTACGTCAAGAAAACAGTTTAGTTGCGTCTGATCAATTAGAAGACGACAATGATTATGCAAATTCACCAGTTTCTGAAGGCCTCAGGTTCTCACAATCTGTTCTTGAGTTCAATGAAATCAAGTGCATTGATGATTTTAGCATCGTTGTGGACAATTTGGTCATAGATTCAGAAATACCAAAACATTTTCATATCAAATACTATGATTTATGTCATAGTCAAAAGGCATATCTTCATGAAAACCTCTTAAAAGGCCTCAATGCTAAACTAGCAGTTGGGATAATTCTTGAAACCATTACGATTGCTGATGCAATCAGAGCTTGTAAAACTGACATTGCACGAGATGATTTAGACACATGGGATAAAACCCTCAAAGGCTTTGAAGAGGTGGGCATGAATATCTCGTTTTTAAGAGCGCGAATTCATAAGCTTGTTGGGCTTTTGTTTGAATCAAACAAGCTTTTGGAAGCAAAAAAGATTGAGCAGTTGAAAGTAGAAGATGAGATAATAGTTATCAGTAAAAAGCTTAATGGGCTCAAAGATGTGATCAAGGATCTTGATGTTGAGATTGAAACTCTAAAGCTAAAGGGTAAGAATCTTGATTTAGTCTTCTGTAAAGAGGCTAATGCACCCTGGTGA 1479 40.77 MVAVATARYIAYRRATAICGQRLKSGRRGPKKATVQIEVEEQDDSNGSDRRRGQRSTGEAAAKPALGDSDRRRRRVAAIQKTAETINDGWLRRTVGEVSYEHPSKTIASYEPKSANLAQTPDSKAKSAAIERANEVQASLPFESPSFVKPMLPSHVTGCFWLGLPKKFCLAHLPKHDETVVLLSENGREFNTKFLVDKTGLSGGWRGFSVAHKLIEGDALVFHLIDQWKFKVYIIRVNGANEIDGALALLNLVPCDTNIYQQQFKNGSKILQKVDNMDIDLRQENSLVASDQLEDDNDYANSPVSEGLRFSQSVLEFNEIKCIDDFSIVVDNLVIDSEIPKHFHIKYYDLCHSQKAYLHENLLKGLNAKLAVGIILETITIADAIRACKTDIARDDLDTWDKTLKGFEEVGMNISFLRARIHKLVGLLFESNKLLEAKKIEQLKVEDEIIVISKKLNGLKDVIKDLDVEIETLKLKGKNLDLVFCKEANAPW 492
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi9g01607 492 Coils Coil 456 476 - -
Mimi9g01607 492 MobiDBLite consensus disorder prediction 31 57 - -
Mimi9g01607 492 Pfam B3 DNA binding domain 147 237 IPR003340 GO:0003677(InterPro)
Mimi9g01607 492 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 108 238 IPR044837 -
Mimi9g01607 492 SUPERFAMILY DNA-binding pseudobarrel domain 142 239 IPR015300 -
Mimi9g01607 492 ProSiteProfiles B3 DNA-binding domain profile. 147 238 IPR003340 GO:0003677(InterPro)
Mimi9g01607 492 MobiDBLite consensus disorder prediction 24 73 - -
Mimi9g01607 492 SMART B3-2 147 238 IPR003340 GO:0003677(InterPro)
Mimi9g01607 492 CDD B3-DNA 145 236 IPR003340 GO:0003677(InterPro)
Mimi9g01607 492 Gene3D - 122 239 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi9g01607 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
130260 Mimi3g00921 Mimi9g01607
421432 Mimi17g00114 Mimi9g01607
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr11:13168125 Mimi9g01607 Mimi-Chr9:60668781 dispersed
Mimi Mimi-Chr12:6592085 Mimi9g01607 Mimi-Chr9:60668781 dispersed
Mimi Mimi-Chr17:3264560 Mimi9g01607 Mimi-Chr9:60668781 dispersed
Mimi Mimi-Chr9:60576641 Mimi9g01607 Mimi-Chr9:60668781 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi19g01445 . 1 488 B3 DNA Binding Superfamily AT1G19220 61.252 0.0 551.0
Mimi19g01446 . 944 1148 B3 DNA Binding Superfamily AT5G20730 52.995 7.05e-60 211.0
Mimi18g00961 . 1 662 B3 DNA Binding Superfamily AT4G30080 54.412 0.0 649.0
Mimi18g01301 . 53 394 B3 DNA Binding Superfamily AT5G62000 47.126 2.61e-99 314.0
Mimi18g02177 . 18 124 B3 DNA Binding Superfamily AT3G18960 29.907 7.28e-14 67.8
Mimi17g00114 WGDA 71 199 B3 DNA Binding Superfamily AT5G42700 41.86 1.72e-28 107.0
Mimi17g00623 . 260 299 B3 DNA Binding Superfamily AT4G23980 67.5 4.61e-13 62.0
Mimi17g02435 . 1 508 B3 DNA Binding Superfamily AT2G33860 52.896 3.78e-171 498.0
Mimi17g02542 . 1 797 B3 DNA Binding Superfamily AT5G37020 56.182 0.0 806.0
Mimi15g00695 . 3 801 B3 DNA Binding Superfamily AT5G37020 62.776 0.0 920.0
Mimi15g01004 . 112 233 B3 DNA Binding Superfamily AT3G19184 39.062 2.19e-26 102.0
Mimi15g01518 . 15 581 B3 DNA Binding Superfamily AT2G46530 56.857 0.0 679.0
Mimi14g02163 . 437 536 B3 DNA Binding Superfamily AT5G62000 40.952 8.67e-08 51.6
Mimi13g00124 . 62 771 B3 DNA Binding Superfamily AT5G60450 53.857 0.0 692.0
Mimi13g00146 . 12 662 B3 DNA Binding Superfamily AT4G30080 43.57 1.41e-155 459.0
Mimi13g00277 . 12 647 B3 DNA Binding Superfamily AT4G30080 51.515 0.0 577.0
Mimi13g00645 . 15 583 B3 DNA Binding Superfamily AT2G46530 58.626 0.0 665.0
Mimi13g01761 . 1 846 B3 DNA Binding Superfamily AT5G62000 51.869 0.0 780.0
Mimi13g01853 . 269 396 B3 DNA Binding Superfamily AT2G30470 48.062 3.19e-34 131.0
Mimi12g00338 WGDA 1 672 B3 DNA Binding Superfamily AT4G32010 48.607 0.0 635.0
Mimi12g00345 . 1 222 B3 DNA Binding Superfamily AT5G58280 52.814 3.20e-72 221.0
Mimi12g00402 . 433 663 B3 DNA Binding Superfamily AT3G24650 60.426 2.63e-77 260.0
Mimi12g00691 . 437 561 B3 DNA Binding Superfamily AT5G62000 32.593 5.86e-06 47.8
Mimi12g01627 . 1 844 B3 DNA Binding Superfamily AT5G62000 57.71 0.0 920.0
Mimi11g00267 ACH 153 236 B3 DNA Binding Superfamily AT3G19184 41.667 2.25e-18 82.8
Mimi10g00736 . 1 485 B3 DNA Binding Superfamily AT2G33860 50.701 4.59e-150 442.0
Mimi10g01479 . 10 106 B3 DNA Binding Superfamily AT5G66980 37.374 4.61e-10 57.0
Mimi9g00090 . 1 616 B3 DNA Binding Superfamily AT4G23980 56.839 0.0 679.0
Mimi9g01204 . 2 663 B3 DNA Binding Superfamily AT1G59750 66.767 0.0 844.0
Mimi9g01605 . 108 256 B3 DNA Binding Superfamily AT3G19184 51.007 3.18e-41 151.0
Mimi9g01607 ACH,WGDA 108 230 B3 DNA Binding Superfamily AT3G19184 56.098 2.15e-41 147.0
Mimi8g00343 . 1 835 B3 DNA Binding Superfamily AT5G62000 57.951 0.0 941.0
Mimi8g01183 . 173 660 B3 DNA Binding Superfamily AT2G28350 34.426 1.90e-55 194.0
Mimi8g01320 . 63 772 B3 DNA Binding Superfamily AT5G60450 53.508 0.0 690.0
Mimi6g00499 ACH 246 403 B3 DNA Binding Superfamily AT2G30470 51.266 9.83e-46 172.0
Mimi6g01453 . 63 772 B3 DNA Binding Superfamily AT5G60450 53.774 0.0 722.0
Mimi6g01480 . 63 772 B3 DNA Binding Superfamily AT5G60450 53.774 0.0 722.0
Mimi5g00186 . 1 852 B3 DNA Binding Superfamily AT5G62000 56.86 0.0 924.0
Mimi5g00490 . 1 228 B3 DNA Binding Superfamily AT3G19184 54.43 3.44e-72 219.0
Mimi5g01302 WGDA 1 733 B3 DNA Binding Superfamily AT4G32010 46.891 0.0 655.0
Mimi5g01676 . 1 777 B3 DNA Binding Superfamily AT4G32010 48.727 0.0 695.0
Mimi4g02157 . 1 486 B3 DNA Binding Superfamily AT1G19220 71.197 0.0 671.0
Mimi3g00492 . 33 488 B3 DNA Binding Superfamily AT1G19220 66.882 0.0 596.0
Mimi3g00508 . 33 488 B3 DNA Binding Superfamily AT1G19220 66.882 0.0 596.0
Mimi3g00921 ACH 8 227 B3 DNA Binding Superfamily AT3G19184 60.268 7.88e-81 241.0
Mimi3g01852 . 1 539 B3 DNA Binding Superfamily AT4G30080 55.235 0.0 543.0
Mimi2g00948 . 267 347 B3 DNA Binding Superfamily AT4G23980 70.37 3.30e-38 140.0
Mimi2g00949 . 14 91 B3 DNA Binding Superfamily AT2G46530 61.538 2.33e-21 96.3
Mimi2g01428 . 1 797 B3 DNA Binding Superfamily AT5G37020 58.333 0.0 839.0
Mimi2g01473 . 1 508 B3 DNA Binding Superfamily AT2G33860 52.783 1.30e-166 487.0
Mimi2g01511 . 5 516 B3 DNA Binding Superfamily AT4G32010 38.336 4.34e-99 321.0
Mimi1g00655 . 33 895 B3 DNA Binding Superfamily AT1G19850 59.407 0.0 960.0
Mimi1g01257 . 15 284 B3 DNA Binding Superfamily AT2G46530 57.664 8.77e-97 292.0
Mimi1g01674 . 14 794 B3 DNA Binding Superfamily AT5G37020 66.298 0.0 989.0
Mimi1g01865 . 23 313 B3 DNA Binding Superfamily AT3G26790 41.98 4.18e-59 190.0
Mimi1g02751 . 74 197 B3 DNA Binding Superfamily AT3G26790 53.226 1.18e-40 141.0
Mimi1g03151 . 1 665 B3 DNA Binding Superfamily AT4G30080 55.947 0.0 692.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi B3 2.8e-15 CL0405 TF B3