AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00465 ATGTATAGAGAACGAGGCGGCGGTGGATCGAAGTCGGAGATCGGGCCTATAGATCGTAAGCGGATCAATGATGCCCTAGACAAGGTTTTGGAGAAATCGTCACCTTCGACGTCTAAGGGTTTGAACGGCAAGGACAAGGATAGGTTATCTGTCCCGTCCACTTCCGCCGGCAAGGTACCGCCTGATCACAGGGACACTCGTTCTGCATCTCTTTCCAAGAACAAGTGCTCGGATGAGGAATCTGAAACAGACAGTGAAGAGTCGGATGTTAGCGGTTCTGATGGTGATGACACATCTTGGATTTCATGGTTTTGCAATCTGCGTGGGAATGAATTTTTCTGCGAAGTTGATGATGAATACATCCAAGACGACTTCAACCTTTGTGGTTTAAGCAGTCAAGTTCCCTACTATGAATATGCACTTGATTTGATTTTGGACGTTGAATCCTCTCATGGTGATATGTTTACTGAGGAACAAAATGAATTAGTTGAATCAGCTGCCGAGATGCTTTATGGGCTGATTCATGTCAGATATATATTAACCAGCAAAGGAATGAATGCAATGTTGGAGAAGTACAAGAACTATGATTTTGGGAGATGTCCTAGGGTTTACTGTTGTGGGCAGCCCTGCCTTCCAGTTGGCCAATCGGACATTCCTCGGTCAAGCACTGTGAAAATCTACTGTCCAAAGTGTGAAGATATTTACTATCCAAGATCGAAGTACCAAGGCAACATTGATGGAGCTTACTTCGGAACTACATTTCCTCACCTCTTTCTGATGACTTATGGACATCTCAAGCCACAGAAGGCACCACAAAGCTATGTTCCGCGAATATTTGGCTTCAAGATTCATAAACCATGA 861 44.37 MYRERGGGGSKSEIGPIDRKRINDALDKVLEKSSPSTSKGLNGKDKDRLSVPSTSAGKVPPDHRDTRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYEYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAPQSYVPRIFGFKIHKP 286
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00465 286 FunFam Casein kinase II subunit beta 92 196 - -
Nenu1g00465 286 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 92 196 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 SUPERFAMILY Casein kinase II beta subunit 97 285 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 FunFam Casein kinase II subunit beta 197 271 - -
Nenu1g00465 286 MobiDBLite consensus disorder prediction 25 95 - -
Nenu1g00465 286 MobiDBLite consensus disorder prediction 60 80 - -
Nenu1g00465 286 Gene3D - 197 271 - -
Nenu1g00465 286 MobiDBLite consensus disorder prediction 1 20 - -
Nenu1g00465 286 PRINTS Casein kinase II regulatory subunit family signature 116 130 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 PRINTS Casein kinase II regulatory subunit family signature 99 115 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 PRINTS Casein kinase II regulatory subunit family signature 218 239 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 PRINTS Casein kinase II regulatory subunit family signature 196 217 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 PRINTS Casein kinase II regulatory subunit family signature 246 263 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 PANTHER CASEIN KINASE II SUBUNIT BETA 79 285 IPR000704 GO:0005737(PANTHER)|GO:0005956(PANTHER)|GO:0005956(InterPro)|GO:0019887(PANTHER)|GO:0019887(InterPro)
Nenu1g00465 286 SMART CK-II-beta-2 99 282 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 Pfam Casein kinase II regulatory subunit 99 282 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nenu1g00465 286 ProSitePatterns Casein kinase II regulatory subunit signature. 200 231 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00465 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr3:107858925 Nenu1g00465 Nenu-Chr1:12990558 transposed
Nenu Nenu-Chr2:91541640 Nenu1g00465 Nenu-Chr1:12990558 transposed
Nenu Nenu-Chr1:12990558 Nenu6g00972 Nenu-Chr6:34871068 wgd